G488329 (LOC106585519)


Basic Information

Item Value
gene id G488329
gene name LOC106585519
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24312291 ~ 24314486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555021
TTTTTAAATTATTTTCTCTTGtccaaaacaaaaaaaagatgaTTGGcagaaaatatacaaaaatataaaGAGAATGCCTCAATACCACATATACAACAGGAAAGTATTTTACAAGAACAAAATCAACTGTTAGTGTTCACTAACTTTAATAATAAGAAAAACAACAGACCCCTAGATTTTCATCAACTCAAATGTACCAATAATGACTTCTCAGATACCTTCTGCACATCACATTAACCCACAACCAACTTTCCAGTGAACTATCTTTCTGTGCAAGCCACTATAATACCTATGGTTCAAACCCTCAGTATTGTAAGTATTCAGAACATCTTAACCTTCAAGAAACCCTCCAAAAACCACTGATAAAACTGCACAgcctctctccactttctctcctTACTTTCTTCCTTCCATATTCTTGAGTGTATAAAACACACCTTTCTTTGTACATTTTCAACACCTACATCAACTACAGCTTTCATTTAAAAAAGATTGTCAATTAAAAGTAGtagagattattttttttaacctgagGTAAGTAATCTGAATTCATAATACACAGCATTCAACATTTACCAGGTTCCATAATCCATATGTATATAAGTCAGACAAAAAGAGGTTGTGAGCCAGATCAGGCAATTCTTAATAATCTATATTACATCTGTATTATTTTCCTACAACATCACCTGACAGCAGTATATAAATCCAAGCCACCCATTTCCTTATCCAGTATATTACAACAGTCTGCTGGAGAGAGTAACTGTTGGGATTTTTATGGTTGTGTTTACCAGTCTGCCAAACAATCAGGACATCAAAGGTTAGAGCTGTCTAAAAACAGACAGAAATGTTCCTCAGGTTTGCCCAGCTAGTCACAGTATTAACTGGTTAgctctgctctccctcctcctctctggatCCAAGTTTGGCATTTCCAACTGGCATCTCCTTCACCAGAGGCATTCTATAACAGAAACcttgactgtctgtctgcctgctgttTATGGTGCCTGCTAAGACTCTGTTTCTGATTGGTTGTAGAAAATGGTAAGAGAATGTGATATTTTCCTTTAGAAGACCTTTGTGTTTCAGACAAAAGAGGCAGATTCTAGAGTTTATGTCATGAAGATGTGGTTTGGTGTCAAAGCAAAACAGCAGAGCCGCAGAGAGGAGTTCAACATCACTGGAGGTGAAAATGAGGTGCTCATGACACCCTCAAGACATGTGATAAGAAAAATGCACAGTTGTGAAGTAGATCTAATGCGGGAGTCCTTTCTGACAGTTCGATGAGGTTGAGACAAAGACATAACTCACTACTAGGGTGAAACCTCCTTTGATACAAAATCTTTGGTCCAATCTTTCAAATGCTAAGTATTACATTTCTGTTTCCCCCTCTTCAGAATACCCACATCATTTACACAGAGGCTGCTTTTCatgagtctgtctgtgtattcGCACGTTTTCCCTTTTGAGCATTCATGAATATGTCATTTCTATAATACATATTGACAGTCCAACAAGATGTGTCACATGCTACCATCAAGCCTTAATTAGTCATGCTCAGCTATCAGAGGTGTGTCTGGAGATGGGAGGAGGCTACAGACTGGAAGGGCTCAACGCAATCAGACAAACAATGAACCATGAAGTGCAGCTCTTTAAAGGCCTATGTGATTCGCTGTACTTCCCCTACAGTACCCCTAATAcattatgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccattccaTAACAGTAGAATTAGCCAGGCAGGGATCAGGTTTAGAGGTCCTCTGTATAGATGATGCAGGGGCTGCTGTCCTCACTGGACTCCAGCTGGACGGTGGAGACAAACCACCGTTGGGAACCCGTAGCGTTGTAGTTGAGCGTGGTGCGGTAAGTGTTCTTGGCGTGTTTGGGGTACACAATGGTGGTGCTCTGGTAGTGCAGGGGCCTCTGGCGCGGCTCTAGGTATACCTGTGACTTGTAACTCCTCCAGGTGCAGTTCTGCATGGCAATGACCGTCTCGCTGTAGGACGTCACCGTTGGAACAGGAGCGCAGTACACCAGGTCCCGGTAGTGCTTGTCTGAGTCATACTTCACCTCAGAGT

Function

NR:

description
refilin-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555021 True 2110 lncRNA 0.41 3 24312291 24314486

Neighbor

gene id symbol gene type direction distance location
ccdc92 LOC106585518 coding downstream 88031 24211144 ~ 24224260 (-)
dtx1 LOC106585516 coding downstream 127922 24129400 ~ 24184369 (-)
LOC110525317 dgcr6 coding downstream 233243 24072614 ~ 24079048 (-)
LOC110525572 LOC106585514 coding downstream 240586 24059911 ~ 24071705 (-)
LOC110525567 LOC106585510 coding downstream 270371 24032069 ~ 24041920 (-)
ncor2 LOC106585520 coding upstream 3426 24317912 ~ 24504123 (-)
LOC118965019 LOC106585477 coding upstream 243001 24557487 ~ 24566324 (-)
LOC118965071 LOC106585477 coding upstream 264219 24578705 ~ 24579373 (-)
ep400 LOC106579917 coding upstream 283484 24597970 ~ 24634358 (-)
LOC110525585 LOC106585524 coding upstream 341302 24655788 ~ 24715090 (-)
G487826 NA non-coding downstream 70231 24241854 ~ 24242060 (-)
G487821 NA non-coding downstream 76807 24235203 ~ 24235484 (-)
G487820 NA non-coding downstream 77243 24234802 ~ 24235048 (-)
G487754 NA non-coding downstream 103010 24207065 ~ 24209281 (-)
G487807 NA non-coding downstream 107059 24204881 ~ 24205232 (-)
G488444 NA non-coding upstream 193850 24508336 ~ 24508631 (-)
G488448 NA non-coding upstream 199138 24513624 ~ 24513910 (-)
G488454 NA non-coding upstream 206826 24521312 ~ 24521637 (-)
G488462 NA non-coding upstream 224738 24539224 ~ 24539425 (-)
LOC110525552 LOC106585495 other downstream 594508 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 726737 23582127 ~ 23587892 (-)
G487016 NA other downstream 920229 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 926384 23385534 ~ 23385907 (-)
G486953 NA other downstream 1058930 23251286 ~ 23258106 (-)
G488386 NA other upstream 39047 24353533 ~ 24353823 (-)
G489038 NA other upstream 791719 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1182477 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1965221 26271759 ~ 26283169 (-)

Expression


Co-expression Network