G487982


Basic Information

Item Value
gene id G487982
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24477104 ~ 24478371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU554629
AAGAATACATTTACACCATAGATccgtatataatgacgagatgctcatgtctccaccctaacaatgggaatggttgtcccaaaggcaggaaggcaaggcgacaagcttaggtcccAAATtaacccatagaaacgcattgggatTACTTTGGACAGATGATTTTGGCGAGTGAAAGCTCTCCCTGCCACACAAACAACAAATATGAGAGATCACTTCTTGGGCAAACGGTTTCAACTTGCcatttgcatttgaggtttggtccaacagaatcagTCATACTGACAcagaaacacattgagacattttACTGTACTACAGAAGTTAACCTTTCTAACAATAACCGTTAATGTCTCAACTCCTCAAATTACGCGCAGAGCAGGAACCACTAAAACATAATGAACAGTGATTCTGGAATATTGCTCAGTTTGTTGTGCGTACCGCTTGCAGCATTTTAGCCAAAGattgttatactagctgtctagtctgtgttttataaaatGTACAATAAGCATAAAACACAATTATATAAGGAATTGGTAACTGGTTCTCATGCTAAGAAATAACGttggccacttgatttcaacatctgaacaaagtggacaggctagctGTTCAAACAGTCGGAGACTGTTCtgccttgttagctagcaaatagatccaagttggcttAACTTGAAAAATAAAGATTCGCTGGCCACTCACTAGCATGTAGGCTTGTGATTGAGAGATTGTTTATGAGACCTGTGTTAATTTTCTATAATGCCTACTACAAGAAGTTATGCATACTCCTCcttcacatacaacacccattctgccgcCCACATTCTGTTAATTAAAGgttcccaaagcacacacatccctgggtccctccatctccatctcttcattcaaagactcaatcttactgacagttgtggctgcttcgcgcaatgtattgttgtctctactttcttgacctttgtgcagttgtctgtgcccaataatgtttgtacaatgttttgtgttgctaccatgctgtgtttacATGTAttactgccatgctgtgttgtcatcttaggtctctctttatgtagtgttgtgggatCTCTcctgtcgtgatgtgtgttttgtcctatatttatttatttttaatcctagcccagtccccacaggaggccttttgccttctggtaggccatcattgtaaataagaatttgttcttacctgacttgcctagttgaataaagttttttttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU554629 True 1236 lncRNA 0.40 2 24477104 24478371

Neighbor

gene id symbol gene type direction distance location
rflna LOC106585519 coding upstream 162569 24301736 ~ 24314535 (+)
LOC110525573 LOC106585515 coding upstream 354505 24080291 ~ 24122599 (+)
LOC110525569 LOC106585512 coding upstream 430902 24042520 ~ 24046202 (+)
LOC110525570 LOC106585512 coding upstream 434745 24042029 ~ 24042359 (+)
LOC110525298 LOC106585338 coding upstream 535226 23925846 ~ 23941878 (+)
stx2b LOC106585525 coding downstream 237975 24716346 ~ 24724878 (+)
LOC110525587 LOC106585527 coding downstream 255461 24733832 ~ 24872673 (+)
LOC110525720 LOC106585530 coding downstream 519193 24997564 ~ 25054975 (+)
LOC110525590 LOC106585531 coding downstream 637012 25115383 ~ 25162130 (+)
LOC110525592 LOC106585533 coding downstream 913327 25391698 ~ 25399930 (+)
G487922 NA non-coding upstream 81639 24393076 ~ 24395465 (+)
G487465 NA non-coding upstream 229977 24246906 ~ 24247127 (+)
G487461 NA non-coding upstream 236022 24240782 ~ 24241082 (+)
G487459 NA non-coding upstream 239099 24237771 ~ 24238005 (+)
G487458 NA non-coding upstream 240763 24236099 ~ 24236341 (+)
G487998 NA non-coding downstream 30052 24508423 ~ 24508646 (+)
G488021 NA non-coding downstream 61698 24540069 ~ 24540278 (+)
G488023 NA non-coding downstream 63438 24541809 ~ 24542040 (+)
G488027 NA non-coding downstream 66638 24545009 ~ 24545279 (+)
G488077 LOC106585522 non-coding downstream 150833 24629204 ~ 24629820 (+)
LOC110525563 LOC106585507 other upstream 562854 23911741 ~ 23914297 (+)
G487146 LOC106585492 other upstream 809177 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 945305 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 1285187 23079630 ~ 23197514 (+)
G486127 NA other upstream 1802652 22674242 ~ 22674452 (+)
G488049 NA other downstream 101590 24579961 ~ 24586313 (+)
G488078 NA other downstream 152598 24630969 ~ 24631396 (+)
G488258 NA other downstream 460398 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1160490 25638816 ~ 25641178 (+)
G489447 NA other downstream 1205315 25683686 ~ 25684311 (+)

Expression


Co-expression Network