G488463


Basic Information

Item Value
gene id G488463
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24540846 ~ 24541640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555225
gggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtgttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagccccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgtcactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagggtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggaaggccaggtctt

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555225 True 795 lncRNA 0.44 1 24540846 24541640

Neighbor

gene id symbol gene type direction distance location
ncor2 LOC106585520 coding downstream 36723 24317912 ~ 24504123 (-)
ccdc92 LOC106585518 coding downstream 316586 24211144 ~ 24224260 (-)
dtx1 LOC106585516 coding downstream 356477 24129400 ~ 24184369 (-)
LOC110525317 dgcr6 coding downstream 461798 24072614 ~ 24079048 (-)
LOC110525572 LOC106585514 coding downstream 469141 24059911 ~ 24071705 (-)
LOC118965019 LOC106585477 coding upstream 15847 24557487 ~ 24566324 (-)
LOC118965071 LOC106585477 coding upstream 37065 24578705 ~ 24579373 (-)
ep400 LOC106579917 coding upstream 56330 24597970 ~ 24634358 (-)
LOC110525585 LOC106585524 coding upstream 114148 24655788 ~ 24715090 (-)
piwil1 piwil1 coding upstream 331583 24873223 ~ 24885005 (-)
G488462 NA non-coding downstream 1421 24539224 ~ 24539425 (-)
G488454 NA non-coding downstream 19209 24521312 ~ 24521637 (-)
G488448 NA non-coding downstream 26936 24513624 ~ 24513910 (-)
G488444 NA non-coding downstream 32215 24508336 ~ 24508631 (-)
G488468 NA non-coding upstream 726 24542366 ~ 24542895 (-)
G488471 LOC106585521 non-coding upstream 3755 24545395 ~ 24593485 (-)
G488487 NA non-coding upstream 50902 24592542 ~ 24596060 (-)
G488505 NA non-coding upstream 98885 24640525 ~ 24640755 (-)
G488506 NA non-coding upstream 100318 24641958 ~ 24642184 (-)
G488386 NA other downstream 187023 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 823063 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 955292 23582127 ~ 23587892 (-)
G487016 NA other downstream 1148784 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 1154939 23385534 ~ 23385907 (-)
G489038 NA other upstream 564565 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 955323 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1738067 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1914092 26455731 ~ 26457883 (-)

Expression


Co-expression Network