G488471 (LOC106585521)


Basic Information

Item Value
gene id G488471
gene name LOC106585521
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24545395 ~ 24593485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555237
CTTGGTCTTTAAGGACTGTTTGAAGGGCTTGAACAGGCCTTTGGAGATGGCAGAAAACATCATGACGAGAAGTGGACGTTTGTGAGGCGTCTCCTGTTGGGAGCTGGCGGGGAGATCCTTTGGCAGTGCAGACATGGCAGCATGTGGCACTATGCTGGGCactacagaagagagagagagttgacatgcACTTTAATCTAGAAATGATGTAATATATGTTACAACTCAACATAATTGACACTGATAAATGAGAACCAACAGCTTGAGTTTTGGAGAATATAATTACTTTTACATAAGAGATGACTACTGATTGCGTATATAACCTTTGTAAGGttattttgaaaaggcatttctttgtacaccaatatctcaaacAATATCCTGTCGTGTgaaggtggcagggaagtcaggcgcaggagagtcaaacggagtgtaaaatggagtcttttaataaatgtccaagtaacatgctccataacactaaatagaAAAATTaatataaacaaatatgggtacgaaaacccgtcgcgcacctatacaaaaaacactacactgacaataaacaatctctgacaaagacatgaggggaaacagagggttaaatacacaacaggtaatgaatgggattgaaaacaggtgtgtgggaagacaagacaaaaccaatagaaaatgaaaaatggatcaatgatggctagaagaccggtgacgtcgaacgccgagcaccgcccgaacaaggagaggcaacgacttcggtagaagtcgtgacagATGGAATGTAGGAATCAACATCTAACTGgtcctctggagcagtggaatcaTAGAAAAACTTCTGGACCATGTTAATCATCTGTTCAGCGGCCTGAGTACCAGAGGCAATGGGGGACGACCGCCCTGAAATGGTTCTACTGCTGGTCAAAGAGAGGGCCAAGTTGAGCTGTTCAAGCACCTCCTTGATAAGACCAACGGTCAGCTCAGGTGGGCAAGAGGCCAACATCTCATGGTCAGAGAGTTGCTCCTGGACACTGCTAATGATACTGTCCTCTGGCATTCCCAGGTGGACTTTCAGtgaggtctgggaactttaaaatgaacaagcaaAGTATGTTAATTGCTGTCTGAAGTTGGAAAATAGATATCTTACTGCTAACAAATCTAACAAGCATTATAATTGAGTATTCTAAATGCAATTTATATGTGTGCATTAGATATTGCAAAACACACCTGTTAGAAAGCTGGAAAATATTTAAATGGAGAAATTATTGTTCATCAGTTTGAGGGTTAGGattaactgcacacacacacacacattatggggaacatacagtacctcttgGAAGAGGGTGTGCTAGACCTTGGTCGGAGAGCCCTGCCGCCACAGTTACACATCTCCTTCGCCAAATATTtaacttcctggatgagctccagTCTTTTCTGCTCAAAGGCAGTGAAGGATCTTGCACTGCAGCCCCTCTTGAGTGAGTCAGCGTTGTCATAAAAGCCTGTCACCCCTAGAATGCGGGCCAGGGCCGGCAGCAGGATCTGCAGGGTGGTCTGTGCAATGAAGTTGACAATGGTCTTGCACAATTTTGCAAGCTGTTCCTTTGTCATCTGCATTGcacaaacaaaacagaacacagcaggtttGGCAAATAAACTCtgatgtaaagtattctagatTGAACAGAATGCATTTTATCAACATCGTTTTCCTTAtctgtgactgaattcaaagtTGAATGAAGTATGACAGATTAATGAACGTAATAGCAGAATAGAACTATGGTTAATTCCTCTCTCTTTATTCAACACAACATTCCCAAATCAAAGGTCAAAGGCTGATGGAGAAACTTACAGGTTTTTAAAATCCTTTATAGATCACTTGCCATTGcctagaaaataaaaaataaatgtgttttagtTACTTTTTATTTCCTTC
>TU555238
CCAGCATAGTTCCAACCACTTTATCTATTTGTGAAAGCTGTCCTGCAGCCACCATTTGACAGTTCTTTCTGAATGGAAACCAGAATATGGCTGAGGGTATTTTTGGCTTGAGCCTTCGTTGCTTTGGCTTGTCTTTGCAATGAGAAATAATTCCTCATCTTTGCCTTCACATTGTGGTAAATAGTCTTTGCAGTTATCCAGATTTTCTTCTCAGATACTTCCACACCAGTCTGGGGGCTTACAGCTGCACATTCGTGGCTTCTGAGGGTTTCTCATCACTCAGTTGAAGCATAGAGTCTGCCTGCCATAGAGTAGTAGGAGACTTGCGGATCTAATTGGCTTATCTAATTCAGCTTTCTTCACAATGCCTTTGACATCTTCAACAAAGCTATCAATTATATTTGGCGCCTCCGAATTCATATTGGTCTGTATGAGCCCAGTGGCCACGGAATGATGGATCGTGTCAGGGTGAGACGCATTCATCAAGCTGGGAGTGGCAATTAATGAATAGGAATGTTCAACCAAACCAGAGGTTCCCCTGGAGTCCCATCTCACTAGAATCTCGCTCACAGCCTTTGAGGCTTTTGTCTTGAACACCAATGCCTTGCAAGATATACACGAGTTCAGCTCCGTTGGGAAAGAAAAGTCTTCATCGTCCAGGTCCTCCACTGCAAGGTCACTGCCAGATGCCAACATTTTAACTTTCACAGCCACTTCTTGAAGCAGCTTAACCGAGTCTGCATCTTCTCCTTTCAATTCATCCACCATGTCTGCAATAACAGTGATCACCTCTTCTGTTGCAGATGGAATGTAGGAATCAACATCTAACTGgtcctctggagcagtggaatcaTAGAAAAACTTCTGGACCATGTTAATCATCTGTTCAGCGGCCTGAGTACCAGAGGCAATGGGGGACGACCGCCCTGAAATGGTTCTACTGCTGGTCAAAGAGAGGGCCAAGTTGAGCTGTTCAAGCACCTCCTTGATAAGACCAACGGTCAGCTCAGGTGGGCAAGAGGCCAACATCTCATGGTCAGAGAGTTGCTCCTGGACACTGCTAATGATACTGTCCTCTGGCATTCCCAGGTGGACTTTCAGtgaggtctgggaactttaaaatgaacaagcaaAGTATGTTAATTGCTGTCTGAAGTTGGAAAATAGATATCTTACTGCTAACAAATCTAACAAGCATTATAATTGAGTATTCTAAATGCAATTTATATGTGTGCATTAGATATTGCAAAACACACCTGTTAGAAAGCTGGAAAATATTTAAATGGAGAAATTATTGTTCATCAGTTTGAGGGTTAGGattaactgcacacacacacacacattatggggaacatacagtacctcttgGAAGAGGGTGTGCTAGACCTTGGTCGGAGAGCCCTGCCGCCACAGTTACACATCTCCTTCGCCAAATATTtaacttcctggatgagctccagTCTTTTCTGCTCAAAGGCAGTGAAGGATCTTGCACTGCAGCCCCTCTTGAGTGAGTCAGCGTTGTCATAAAAGCCTGTCACCCCTAGAATGCGGGCCAGGGCCGGCAGCAGGATCTGCAGGGTGGTCTGTGCAATGAAGTTGACAATGGTCTTGCACAATTTTGCAAGCTGTTCCTTTGTCATCTGCATTGcacaaacaaaacagaacacagcaggtttGGCAAATAAACTCtgatgtaaagtattctagatTGAACAGAATGCATTTTATCAACATCGTTTTCCTTAtctgtgactgaattcaaagtTGAATGAAGTATGACAGATTAATGAACGTAATAGCAGAATAGAACTATGGTTAATTCCTCTCTCTTTATTCAACACAACATTCCCAAATCAAAGGTCAAAGGCTGATGGAGAAACTTACAGGTTTTTAAAATCCTTTATAGATCACTTGCCATTGcctagaaaataaaaaataaatgtgttttagtTACTTTTTATTTCCTTC

Function

NR:

description
uncharacterized protein LOC110525580 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555237 False 1936 lncRNA 0.42 2 24545395 24549953
TU555238 True 1971 lncRNA 0.43 3 24545395 24593485

Neighbor

gene id symbol gene type direction distance location
ncor2 LOC106585520 coding downstream 41272 24317912 ~ 24504123 (-)
ccdc92 LOC106585518 coding downstream 321135 24211144 ~ 24224260 (-)
dtx1 LOC106585516 coding downstream 361026 24129400 ~ 24184369 (-)
LOC110525317 dgcr6 coding downstream 466347 24072614 ~ 24079048 (-)
LOC110525572 LOC106585514 coding downstream 473690 24059911 ~ 24071705 (-)
ep400 LOC106579917 coding upstream 4485 24597970 ~ 24634358 (-)
LOC110525585 LOC106585524 coding upstream 62303 24655788 ~ 24715090 (-)
piwil1 piwil1 coding upstream 279738 24873223 ~ 24885005 (-)
LOC110525589 LOC106585529 coding upstream 318142 24911627 ~ 24917852 (-)
LOC110525591 LOC106579906 coding upstream 579376 25172861 ~ 25375482 (-)
G488468 NA non-coding downstream 2500 24542366 ~ 24542895 (-)
G488463 NA non-coding downstream 3755 24540846 ~ 24541640 (-)
G488462 NA non-coding downstream 5970 24539224 ~ 24539425 (-)
G488454 NA non-coding downstream 23758 24521312 ~ 24521637 (-)
G488448 NA non-coding downstream 31485 24513624 ~ 24513910 (-)
G488505 NA non-coding upstream 47040 24640525 ~ 24640755 (-)
G488506 NA non-coding upstream 48473 24641958 ~ 24642184 (-)
G488507 NA non-coding upstream 48732 24642217 ~ 24642779 (-)
G488508 NA non-coding upstream 50224 24643709 ~ 24644217 (-)
G488533 NA non-coding upstream 81836 24675321 ~ 24675587 (-)
G488386 NA other downstream 191572 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 827612 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 959841 23582127 ~ 23587892 (-)
G487016 NA other downstream 1153333 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 1159488 23385534 ~ 23385907 (-)
G489038 NA other upstream 512720 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 903478 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1686222 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1862247 26455731 ~ 26457883 (-)

Expression


Co-expression Network