G488049


Basic Information

Item Value
gene id G488049
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24579961 ~ 24586313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU554703
GTAATGGGTGTGGTCACctcatgtgtgtgaggtggtacaaaggaggtatcagaggtatgaagagtggaactaggggctccattgtaaaccaaaacaatgataactaacctgaacaacagtatacaaggcatattgacatttgagagagacatacagcgaggcataaagtaatcgcaggtgttgattgggagagcttgctaaaacaacagAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAGGTTGTGGAGAATATGAAGGATGAAACAGAGACACATGAGACCAACaagaacaggacaggaggcaAGAGTCTTCTCAGACACCCGGGTGTGGTTTCCGGGAAAGGGGATCTATCATTgagcagctggagaaggaggctcAGAGGACTCTAATGCCTTCTCTCAAGATTGAGACATGCTGTGCcccaatcctcctctccttcctgaggagtCTAACTGATGACCAATGGAGGGTGATTCAGCATGGCATGAAAAATAACCTCACATTCGAGCAGCTCTCCACGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGCATTCTCCTACCAGCGCTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCagtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcagtGCAGGGTTCCGCCAAAAATCCACTCGCAGAACCTCATCACCATGCTGTTCGCCTAAGAGGTCCCAGACCTCATTTCAGAGCTTGCCTGCAACTAGAGAGGCTCCACTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTCCTGATATCCCTGGTTGAGGGTCACTCCAACCCCACATCCTCCGAGTTGA

Function

NR:

description
uncharacterized protein LOC109873445

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU554703 True 962 TUCP 0.50 6 24579961 24586313

Neighbor

gene id symbol gene type direction distance location
rflna LOC106585519 coding upstream 265426 24301736 ~ 24314535 (+)
LOC110525573 LOC106585515 coding upstream 457362 24080291 ~ 24122599 (+)
LOC110525569 LOC106585512 coding upstream 533759 24042520 ~ 24046202 (+)
LOC110525570 LOC106585512 coding upstream 537602 24042029 ~ 24042359 (+)
LOC110525298 LOC106585338 coding upstream 638083 23925846 ~ 23941878 (+)
stx2b LOC106585525 coding downstream 130033 24716346 ~ 24724878 (+)
LOC110525587 LOC106585527 coding downstream 147519 24733832 ~ 24872673 (+)
LOC110525720 LOC106585530 coding downstream 411251 24997564 ~ 25054975 (+)
LOC110525590 LOC106585531 coding downstream 529070 25115383 ~ 25162130 (+)
LOC110525592 LOC106585533 coding downstream 805385 25391698 ~ 25399930 (+)
G488027 NA non-coding upstream 34682 24545009 ~ 24545279 (+)
G488023 NA non-coding upstream 37921 24541809 ~ 24542040 (+)
G488021 NA non-coding upstream 39683 24540069 ~ 24540278 (+)
G487998 NA non-coding upstream 71315 24508423 ~ 24508646 (+)
G487982 NA non-coding upstream 101590 24477104 ~ 24478371 (+)
G488077 LOC106585522 non-coding downstream 42891 24629204 ~ 24629820 (+)
G488079 LOC106585522 non-coding downstream 45763 24632076 ~ 24633377 (+)
G488088 NA non-coding downstream 56273 24642586 ~ 24642833 (+)
G488091 NA non-coding downstream 58719 24645032 ~ 24672992 (+)
G488106 NA non-coding downstream 89576 24675889 ~ 24676095 (+)
LOC110525563 LOC106585507 other upstream 665711 23911741 ~ 23914297 (+)
G487146 LOC106585492 other upstream 912034 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 1048162 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 1388044 23079630 ~ 23197514 (+)
G486127 NA other upstream 1905509 22674242 ~ 22674452 (+)
G488078 NA other downstream 44656 24630969 ~ 24631396 (+)
G488258 NA other downstream 352456 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1052548 25638816 ~ 25641178 (+)
G489447 NA other downstream 1097373 25683686 ~ 25684311 (+)
LOC110525642 bin3 other downstream 2902283 27488557 ~ 27543022 (+)

Expression


Co-expression Network