G489069


Basic Information

Item Value
gene id G489069
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25142449 ~ 25143658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555857
acaatagtaatttacaacattaacaatgtctacactgtatttctgatcaatttgatgttattttaatagacaaaagtgcttctttcaaaaacaaggacatttctaactgATCCCAaactttgaatggtagtgtaaatGTGGTATATTGCTTAATTTCATTTGTGACCAAAGTCTAACAAAATATCACAAATGAGACAAAATTTCACCTGCCCCTTTAAGGGCGGGAGGTTACCATGGTGACACGACTTGAATCATGTCTATGCCTGTGAGATTGAGTGACGAGTAGCCGCGTTGTCTTCTCTACCCAACAGTCATAGCCGCAGGACGTAGTTTGGGGGTGGGGTCGCTGCTGATTTTTCAAAACTAAATGCATTTGTATTTGAGTGTTTACCAGCATTTGTAActtgagtctgataattatcGGTACAAAACAGTTAATCTGATAATACTTGTGGAATATAAAAATACTTGCTGGATATAGGTTttccagtttcttgaaatacttAACAAAATGCAACTTATTTCTACGGGTAAACTGAAAAGGTCTTCCTTTTTCATTCCTTTTACATTTTAGTAGATGCTGATATCCAGAGAAatgtacagtagtgagtgcatacattttcatatgttTTTGTattggtcccccatgggaattaaACCCACAATCCTAgctttgcaagcaccatgctctaccaacagagCCATATCATCACAAACCACTTGATGTCTCAATGTAACTCAATTACTGTATTGTGCATAGTTTTTCTCCATGGTGATGGAAAGTCTACAAGTACAAACCTAGATTACCAGCCTATGTACAATATagtaatgtacatttacattaagGGGTTTGTAAGGATGATAAATTAATTCTGCACAAAAAGGGGTTGTTTTCCATGTCATTTGATAAAAAATATTTGTGTCTTTGCTCATAACTTTGCACATTTTCATGTAAATGTTTGAGGACAGAGTTTTGTTATTTGTGGATTTCATTAGAATGACAAATCACAGAGGAGGAGACATGGCAACAACTATTGAACCCTACAAGATACTGTACTTGATTATACAGAAGAGATGCTGGAAAATAATGTTTTTGCTGGTGCTAAAGATGTCTATATTAGTCCGCTAacactagtaaaggcccagtgcactacctttgtgaattaaaataatatatatataaaaataaaaaatgtaattcagATTTCTC

Function

NR:

description
Deoxyribonuclease gamma precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555857 True 1210 lncRNA 0.35 1 25142449 25143658

Neighbor

gene id symbol gene type direction distance location
LOC110525589 LOC106585529 coding downstream 224597 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 257444 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 427359 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 508091 24597970 ~ 24634358 (-)
LOC118965071 LOC106585477 coding downstream 563076 24578705 ~ 24579373 (-)
LOC110525591 LOC106579906 coding upstream 29203 25172861 ~ 25375482 (-)
LOC110525597 NA coding upstream 305361 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 499574 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 560516 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 835296 25978954 ~ 26067633 (-)
G489068 NA non-coding downstream 109 25141367 ~ 25142340 (-)
G489062 NA non-coding downstream 8791 25133417 ~ 25133658 (-)
G489058 NA non-coding downstream 11740 25130495 ~ 25130709 (-)
G489054 NA non-coding downstream 18583 25123663 ~ 25123866 (-)
G489053 NA non-coding downstream 19426 25122745 ~ 25123023 (-)
G489072 NA non-coding upstream 5455 25149113 ~ 25149270 (-)
G489070 NA non-coding upstream 16806 25160464 ~ 25162084 (-)
G489076 NA non-coding upstream 23140 25166798 ~ 25167060 (-)
G489083 NA non-coding upstream 32057 25175715 ~ 25175957 (-)
G489038 NA other downstream 35879 25106205 ~ 25106570 (-)
G488386 NA other downstream 788626 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1424666 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1556895 23582127 ~ 23587892 (-)
G489511 hmcn2 other upstream 353305 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1136049 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1312074 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1403564 26481087 ~ 26551627 (-)
G491291 NA other upstream 1681209 26824867 ~ 26867158 (-)

Expression


Co-expression Network