G489070


Basic Information

Item Value
gene id G489070
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25160464 ~ 25162084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU555858
AAAAAACATTCTAAATACCAATGCTCCAGCATAATTAAAACATAATACATTTTCAGAAAATGTTTCTTCAAAAGCTGTTAAGTTGACACAAAAAATAACCACCATTCATCCAACAAACACTATAATAAAACAGCCAAAATAATGTGTTAGTAAATGGTTTCAATGTGTTAGCTAAAAAGGTCAATTCAAGCCACCAACCTGAGAATCTGTAAACAACTGTACTTCATGAGATCTCAAAGACAGTTTACTAACTCTTCTAAACAATTGTATTGGTATTCTTTAATAATTCAATTATTCTACCTCCCTTGAACCCTGAGTAGATTTTGGTTTGTAAAATACTTTACTTTCAGCTTGAACGTTTTGCACTTAGGTCTACTGTAGGTAAAGCAAACCTGCAGATCGCTCCTAAACAATCAATTGTCGGGTAAagggaaaaaaaacacattgtgGATCTTGCTATTTAACAGAACATACATTTTGTAGTGCCAGAGTCAACGATTAAAGAGCTTTGACTGGAGTGAAATATACCAACTACATGGAGTGCTCTGAACATTGTCTACCATATGATAAGTACACATTAGTCACAACCCCCAAAAGCTACAGCATGTAGAAGTCCATAAGGACACCATGTGGCGACTACAGACATTCATTAACACATCCAAATCTGAGGCTAGACATTGTCAACAGTCAGACTAATACTGCAAATTAACATTTTCATCTTAACCGTCACCCCAAGTGCATAAAGAAACCAGTAACTCTAAAATTGTGGTTCAGTTTGAACTAATGTCAACTTAATGAAAACATTTACTTTCACGATACACGTTGTTTTCTGCTGCAGCAATCACAGAATAACACGACATTGTGCCATTGCTGGCTAGGGATGATTATTCTGAGTAAATGATGATGGTAAATATACCTAAATGGTTTTCAAGTTGAACCAACTGGCAATATATACATTTGtcattattttttttgtaatcaTATTAAAGTTTGATTAAATCATTGCATAGTCAAAAAGTAGTAGTCTAAACGTTATTCATGGATTTAGCAGGCACGTTTAAttaaagaaatacatttgatattTAAGTAACTCTAGATCAACGGCTAAAAGACAAAGTGTAtgtatacacagtgtacaaaaaaTGTGGAACGCCCgctttttccatgacagactgaccaggatcccttattgatgtcacttgttaaatccacttcaaaatcaggtgtagatgaaggggaggagacacgttaaagaatgatttttaagcctagaaacaattgaaacatggaatgtgtatgtgagccattcagagggtgaatgggcaagacacaattgcctttgaacagggtatggtagtaggtgccaggtgcactggtttgtgttTGATACAGTCCGCTGTGTGTCaagaaaggacatccagccaacttgacaactgtgggaagtattggagtcaacatgtggcacacttgacaccttgtagagtccagaattgaggctgttctgggggcaaaagggggtgcaactcaatatttggaacgtgttcctaatgttttgtacactcagtgtataagcAACAGTATGACATCAAAATGAAAGACTGAAAACATAGCTCCATATTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU555858 True 1621 lncRNA 0.36 1 25160464 25162084

Neighbor

gene id symbol gene type direction distance location
LOC110525589 LOC106585529 coding downstream 242612 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 275459 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 445374 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 526106 24597970 ~ 24634358 (-)
LOC118965071 LOC106585477 coding downstream 581091 24578705 ~ 24579373 (-)
LOC110525591 LOC106579906 coding upstream 10777 25172861 ~ 25375482 (-)
LOC110525597 NA coding upstream 286935 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 481148 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 542090 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 816870 25978954 ~ 26067633 (-)
G489072 NA non-coding downstream 11194 25149113 ~ 25149270 (-)
G489069 NA non-coding downstream 16806 25142449 ~ 25143658 (-)
G489068 NA non-coding downstream 18124 25141367 ~ 25142340 (-)
G489062 NA non-coding downstream 26806 25133417 ~ 25133658 (-)
G489058 NA non-coding downstream 29755 25130495 ~ 25130709 (-)
G489076 NA non-coding upstream 4714 25166798 ~ 25167060 (-)
G489083 NA non-coding upstream 13631 25175715 ~ 25175957 (-)
G489088 NA non-coding upstream 21406 25183490 ~ 25184124 (-)
G489095 NA non-coding upstream 34348 25196432 ~ 25196643 (-)
G489038 NA other downstream 53894 25106205 ~ 25106570 (-)
G488386 NA other downstream 806641 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1442681 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1574910 23582127 ~ 23587892 (-)
G489511 hmcn2 other upstream 334879 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 1117623 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1293648 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1385138 26481087 ~ 26551627 (-)
G491291 NA other upstream 1662783 26824867 ~ 26867158 (-)

Expression


Co-expression Network