G489315



Basic Information


Item Value
gene id G489315
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25416890 ~ 25417207 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU556112
actccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttctttgctcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattgcacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagta

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU556112 True 318 lncRNA 0.42 1 25416890 25417207

Neighbor


gene id symbol gene type direction distance location
LOC110525591 LOC106579906 coding downstream 41408 25172861 ~ 25375482 (-)
LOC110525589 LOC106585529 coding downstream 499038 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 531885 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 701800 24655788 ~ 24715090 (-)
ep400 LOC106579917 coding downstream 782532 24597970 ~ 24634358 (-)
LOC110525597 NA coding upstream 31812 25449019 ~ 25451212 (-)
LOC110525601 LOC106585539 coding upstream 226025 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 286967 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 561747 25978954 ~ 26067633 (-)
LOC110525604 LOC106585543 coding upstream 817345 26234552 ~ 26264035 (-)
G489307 NA non-coding downstream 10223 25406046 ~ 25406667 (-)
G489302 NA non-coding downstream 13508 25403030 ~ 25403382 (-)
G489237 NA non-coding downstream 29779 25386760 ~ 25387111 (-)
G489224 NA non-coding downstream 42826 25373805 ~ 25374064 (-)
G489212 NA non-coding downstream 65551 25351113 ~ 25351339 (-)
G489316 NA non-coding upstream 804 25418011 ~ 25418217 (-)
G489317 NA non-coding upstream 2321 25419528 ~ 25419782 (-)
G489311 NA non-coding upstream 16307 25433514 ~ 25434613 (-)
G489328 NA non-coding upstream 18236 25435443 ~ 25435959 (-)
G489329 LOC106585340 non-coding upstream 20456 25437663 ~ 25437968 (-)
G489038 NA other downstream 310320 25106205 ~ 25106570 (-)
G488386 NA other downstream 1063067 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1699107 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 1831336 23582127 ~ 23587892 (-)
G489511 hmcn2 other upstream 79756 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 862500 26271759 ~ 26283169 (-)
tmem230b LOC106585554 other upstream 1038525 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 1130015 26481087 ~ 26551627 (-)
G491291 NA other upstream 1407660 26824867 ~ 26867158 (-)

Expression



Co-expression Network