Gene
RNA
| Item | Value |
|---|---|
| gene id | G489329 |
| gene name | LOC106585340 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 25437663 ~ 25437968 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| immediate early response gene 5-like protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU556127 | True | 306 | lncRNA | 0.43 | 1 | 25437663 | 25437968 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525591 | LOC106579906 | coding | downstream | 62181 | 25172861 ~ 25375482 (-) |
| LOC110525589 | LOC106585529 | coding | downstream | 519811 | 24911627 ~ 24917852 (-) |
| piwil1 | piwil1 | coding | downstream | 552658 | 24873223 ~ 24885005 (-) |
| LOC110525585 | LOC106585524 | coding | downstream | 722573 | 24655788 ~ 24715090 (-) |
| ep400 | LOC106579917 | coding | downstream | 803305 | 24597970 ~ 24634358 (-) |
| LOC110525597 | NA | coding | upstream | 11051 | 25449019 ~ 25451212 (-) |
| LOC110525601 | LOC106585539 | coding | upstream | 205264 | 25643232 ~ 25660249 (-) |
| lmx1bb | LOC106585540 | coding | upstream | 266206 | 25704174 ~ 25768796 (-) |
| pbx3b | LOC106585542 | coding | upstream | 540986 | 25978954 ~ 26067633 (-) |
| LOC110525604 | LOC106585543 | coding | upstream | 796584 | 26234552 ~ 26264035 (-) |
| G489328 | NA | non-coding | downstream | 1704 | 25435443 ~ 25435959 (-) |
| G489311 | NA | non-coding | downstream | 3050 | 25433514 ~ 25434613 (-) |
| G489317 | NA | non-coding | downstream | 17881 | 25419528 ~ 25419782 (-) |
| G489316 | NA | non-coding | downstream | 19446 | 25418011 ~ 25418217 (-) |
| G489315 | NA | non-coding | downstream | 20456 | 25416890 ~ 25417207 (-) |
| G489309 | NA | non-coding | upstream | 17129 | 25455097 ~ 25458118 (-) |
| G489332 | NA | non-coding | upstream | 22423 | 25460391 ~ 25460724 (-) |
| G489333 | NA | non-coding | upstream | 23408 | 25461376 ~ 25461681 (-) |
| G489336 | NA | non-coding | upstream | 27792 | 25465760 ~ 25466022 (-) |
| G489038 | NA | other | downstream | 331093 | 25106205 ~ 25106570 (-) |
| G488386 | NA | other | downstream | 1083840 | 24353533 ~ 24353823 (-) |
| LOC110525552 | LOC106585495 | other | downstream | 1719880 | 23713875 ~ 23717830 (-) |
| LOC110525180 | hps4 | other | downstream | 1852109 | 23582127 ~ 23587892 (-) |
| G489511 | hmcn2 | other | upstream | 58995 | 25496963 ~ 25497489 (-) |
| LOC110525606 | LOC106585545 | other | upstream | 841739 | 26271759 ~ 26283169 (-) |
| tmem230b | LOC106585554 | other | upstream | 1017764 | 26455731 ~ 26457883 (-) |
| LOC110525619 | LOC106585557 | other | upstream | 1109254 | 26481087 ~ 26551627 (-) |
| G491291 | NA | other | upstream | 1386899 | 26824867 ~ 26867158 (-) |
