Gene
RNA
| Item | Value |
|---|---|
| gene id | G489524 |
| gene name | hmcn2 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 25517411 ~ 25517656 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| hmcn2 | Predicted to enable calcium ion binding activity. Acts upstream of or within several processes, including embryonic medial fin morphogenesis; mesenchymal cell migration; and skin morphogenesis. Is expressed in several structures, including axis; median fin fold; mesoderm; myotome; and trunk. Orthologous to human HMCN2 (hemicentin 2). |
| description |
|---|
| hemicentin-2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU556332 | True | 246 | lncRNA | 0.59 | 1 | 25517411 | 25517656 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525597 | NA | coding | downstream | 66199 | 25449019 ~ 25451212 (-) |
| LOC110525591 | LOC106579906 | coding | downstream | 141929 | 25172861 ~ 25375482 (-) |
| LOC110525589 | LOC106585529 | coding | downstream | 599559 | 24911627 ~ 24917852 (-) |
| piwil1 | piwil1 | coding | downstream | 632406 | 24873223 ~ 24885005 (-) |
| LOC110525585 | LOC106585524 | coding | downstream | 802321 | 24655788 ~ 24715090 (-) |
| LOC110525601 | LOC106585539 | coding | upstream | 125576 | 25643232 ~ 25660249 (-) |
| lmx1bb | LOC106585540 | coding | upstream | 186518 | 25704174 ~ 25768796 (-) |
| pbx3b | LOC106585542 | coding | upstream | 461298 | 25978954 ~ 26067633 (-) |
| LOC110525604 | LOC106585543 | coding | upstream | 716896 | 26234552 ~ 26264035 (-) |
| LOC110525606 | LOC106585545 | coding | upstream | 754103 | 26271759 ~ 26283169 (-) |
| G489520 | NA | non-coding | downstream | 6023 | 25511169 ~ 25511388 (-) |
| G489518 | NA | non-coding | downstream | 9162 | 25507988 ~ 25508249 (-) |
| G489322 | NA | non-coding | downstream | 27256 | 25489162 ~ 25490155 (-) |
| G489336 | NA | non-coding | downstream | 51389 | 25465760 ~ 25466022 (-) |
| G489333 | NA | non-coding | downstream | 55730 | 25461376 ~ 25461681 (-) |
| G489527 | NA | non-coding | upstream | 2053 | 25519709 ~ 25519913 (-) |
| G489590 | LOC106585538 | non-coding | upstream | 79141 | 25596797 ~ 25607479 (-) |
| G489622 | NA | non-coding | upstream | 123883 | 25641539 ~ 25643175 (-) |
| G489630 | NA | non-coding | upstream | 145485 | 25663141 ~ 25663812 (-) |
| G489646 | NA | non-coding | upstream | 166796 | 25684452 ~ 25684684 (-) |
| G489511 | hmcn2 | other | downstream | 19922 | 25496963 ~ 25497489 (-) |
| G489038 | NA | other | downstream | 410841 | 25106205 ~ 25106570 (-) |
| G488386 | NA | other | downstream | 1163588 | 24353533 ~ 24353823 (-) |
| LOC110525552 | LOC106585495 | other | downstream | 1799628 | 23713875 ~ 23717830 (-) |
| tmem230b | LOC106585554 | other | upstream | 938076 | 26455731 ~ 26457883 (-) |
| LOC110525619 | LOC106585557 | other | upstream | 1029566 | 26481087 ~ 26551627 (-) |
| G491291 | NA | other | upstream | 1307211 | 26824867 ~ 26867158 (-) |
| G491539 | NA | other | upstream | 1698951 | 27216607 ~ 27244193 (-) |
