G489590 (LOC106585538)


Basic Information

Item Value
gene id G489590
gene name LOC106585538
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25596797 ~ 25607479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU556407
TTGGTAGTGATAGAGGGGCTGCCTGTGCCGCTGGGCATGGTAGGAATGACAGGCAGTACAGACTTCTGGTCACTCTGAATCTCGTTGGTGATCTGGTTGGTGAGGCGTGGGTAGGTGGGAGGTTGGTAGGGCTTGTTGATGGGTGGTGATGGTGCAGGTGGGGGTGGGGGCTGTGGCCTTGGCTGGGGGACGGGAACAGGGCGAGGGGGGCTGACGGGCCGACCCTGGCACTGCTCCTCCAGCAGGGCGATGAGGACCGACTGGTTGTTGGCCAGAGTGGCCAGGTGCTGGTACTTGTGCTCCAGGTCCTTGTAGCGGTTAGTGAGCTGCTGCATCTCCGAGGTCTGGTTGAGGATGCGGTTCTCCATCTGGGACAGCTCCAGGGCGTTGTCCCTCTTCCTGATGATCTCGTGTAGCAGCTGCATGTAGAGCTGGGTCACCCTGGAGTTCATGTTCCTGCTCTCCTTCCTCAGCAGCTTCACCTCGTTGACGATGCCTCCGTCCACCTCAACCAGCTGCTGCAGCGTCTCGATCTGCCTCTTCTGCTTCTGCAGCTCCTCGTTCAGCAGCTCCAGTTCCTGCTTGTTGACGCGGTTCTCCAGCGCTGCATCCGGCTCCTTGCGGTTCACACAGATGGCCCCTGTCACCTTCTGCTGGGGAACGATGAAGGTGTAGGAACACTTGTCAGGCTGCTGGGGTTCAGCTGCGGCTCGCCTGCTCCTCTGCCCAGGATACAGGAACTCTCTCTCCAGGCCATCCTCATTGCTCTCCCTTTCCTTGCTCCTGGCCTGGGGGTTGCTCTCCTGAGGGTTCCCCGGACCCTGGGGCTGCTTGGCTCCAGAGACAAGACCATACACTAGGAACAGCAGCACCACGGGGAGCTCCATCAGTCTGGGAAgggctctcactcacacacaccttaggAGGTATAGGGATTTAGAACAGATAATTGTAGACTGTAGCTTGTTTTCCCTTCAGTTCCCTTGCCCTCCCGGCAACACTGATTGACGTGTCCCCTTGAAGAAAGTCATCACCAGTCTGTGTAAAAGCTGCTTGgggctgtccctctctctctggatcactTGCTCTTTGGCACCTGAGTAAACCCTGTCACTCAATAGTTGACTGTGGTTTGAATCATGTTATTACAACCAGGAGCTGCACTTGCTGGGAATAAGTCCTTTGTACTGTAGGCACTGGGCAAGGATAAAAAAATTAACCTCATAAGATTTTAGACACTTACCAATTAAAAGAGAATACATCCAAATGTGTTAGATGTAATGGGTAGTTTCCTCAGAGGCAGTGAGAGAGCAGCAGGCAGTGAGAGGCCAGCATTGTCTGGTCAGTGTGCTCTCTGTAGGCCGGTAGGAGAAGACTATCACTTTCTATGTGCTGAGTCCATCACTTCTGCTGACGACTGAGACAATCTTTTTCTGCTGCCCCCCTTAATAACtccccttttctttctctcctttctctctcc

Function

NR:

description
angiopoietin-related protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU556407 True 1483 lncRNA 0.55 2 25596797 25607479

Neighbor

gene id symbol gene type direction distance location
LOC110525597 NA coding downstream 145585 25449019 ~ 25451212 (-)
LOC110525591 LOC106579906 coding downstream 221315 25172861 ~ 25375482 (-)
LOC110525589 LOC106585529 coding downstream 678945 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 711792 24873223 ~ 24885005 (-)
LOC110525585 LOC106585524 coding downstream 881707 24655788 ~ 24715090 (-)
LOC110525601 LOC106585539 coding upstream 35753 25643232 ~ 25660249 (-)
lmx1bb LOC106585540 coding upstream 96695 25704174 ~ 25768796 (-)
pbx3b LOC106585542 coding upstream 371475 25978954 ~ 26067633 (-)
LOC110525604 LOC106585543 coding upstream 627073 26234552 ~ 26264035 (-)
LOC110525606 LOC106585545 coding upstream 664280 26271759 ~ 26283169 (-)
G489527 NA non-coding downstream 76884 25519709 ~ 25519913 (-)
G489524 hmcn2 non-coding downstream 79141 25517411 ~ 25517656 (-)
G489520 NA non-coding downstream 85409 25511169 ~ 25511388 (-)
G489518 NA non-coding downstream 88548 25507988 ~ 25508249 (-)
G489322 NA non-coding downstream 106642 25489162 ~ 25490155 (-)
G489622 NA non-coding upstream 34060 25641539 ~ 25643175 (-)
G489630 NA non-coding upstream 55662 25663141 ~ 25663812 (-)
G489646 NA non-coding upstream 76973 25684452 ~ 25684684 (-)
G489706 NA non-coding upstream 163658 25771137 ~ 25771355 (-)
G489721 LOC106569888 non-coding upstream 178120 25785599 ~ 25785942 (-)
G489511 hmcn2 other downstream 99308 25496963 ~ 25497489 (-)
G489038 NA other downstream 490227 25106205 ~ 25106570 (-)
G488386 NA other downstream 1242974 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1879014 23713875 ~ 23717830 (-)
tmem230b LOC106585554 other upstream 848253 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 939743 26481087 ~ 26551627 (-)
G491291 NA other upstream 1217388 26824867 ~ 26867158 (-)
G491539 NA other upstream 1609128 27216607 ~ 27244193 (-)

Expression


Co-expression Network