G490982


Basic Information

Item Value
gene id G490982
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26755780 ~ 26818625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU557969
TTATTGGGAAATTATGGAAAGGATGACAAACATTTTAGTTACTTGTCTCCTGGGCAAATTAAAACatacatagattttttttaaatacatctGACACTCACATACATCTGACACTCACTGCATACATACACTTTAAATATAACCTTTTTTTCTCATTATCAAAATCCTGAATTTAGCTACACGTGACTAAAATATTATCCATTGCACTATTGCACCAATAATCCCCAGGCTAAGCTTCGGGTGGAAGTGGCTGGGAACAGAGTATGTGAGCAGAGCGTTCCCAATTCGACTGGGGCGTGATTCCCGAAGGCTGGAGCGTAGGGCTTTGCTCAGGCTCCAATTTCGCTCTCACTTCACGAGCTCAGGCCAGTACCACTCACTTCACAAGCTCAGGGCATGcccggcccagcatgcatttgcagtctacttgtgtgctgctaactatagctactatCATGGAGTTCGCTAAATATTTTCAAAAAGAAACTGATGAAACACACAGGTGCTTAATGAAGGTGACTTACCAAGACGAtgaccaagagcaagagagggagtgcgGTGATATAGTGTACACAACTAAATAATctttgtggaatctgaaaagacacgtATTCTGAAAGTATGATCGTGTACTTACTGCATGCACATGCTAAAAGAAAGGTACGAGGTGGGTAGATAactgtgtcattgtagcaaagtatttctAAACAAAAAATCTGATCTCTTAAACCTTAAGTGTATTTTtgttctattatctatacaacaggccataattgattttggcccaataggccTGGCATATTCACACATTCAAGCAGCTTTCTtttttgattgggttattttgcctaaaaacaTTCAGGCCTACCTATTACCCAGCAAGAGTGGCCAAAGGGGTGTTTAGCATCCCCTGGAGCTCTGCACGTGTGGGGAGGGTATTCTCCGCTGCTGGCCGTCTCTCCAGGCACCCACCATgcatgagcctgaagccacagactggCCAAACTTGTATTTAAACAAATTCAAAGGCACTAATAGGTCATTTTTTGGTGTATtttgtatttaattctaagtaaGTCACAGCCTATATATGCAATTAATAAACTAGaatgatttaatacaacaaaAGGTGGCTCTTTGAATGTGTCACACTCGCAAATGCTTCACTATGTATTTTTTGTAgactatagccttgaaataatttaAATTATGtagcctaaataattcattttcgttccttcttaggctccctgtctggATTTCCAACCGCTCAACTCCCTCACATGCTCTGGCTGGGAACGAGATTATACATAAAACATATCCTttaatagagtaccacagtatgaatctcaatacccataaaacctagcggtcaaacagggaaatggttccaatcGGTTCTCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU557969 True 1404 lncRNA 0.40 2 26755780 26818625

Neighbor

gene id symbol gene type direction distance location
LOC110525624 LOC100380864 coding downstream 15137 26738279 ~ 26740643 (-)
LOC110525623 cenpe coding downstream 22836 26726252 ~ 26732944 (-)
LOC110525622 NA coding downstream 31754 26713456 ~ 26724026 (-)
LOC110525621 LOC106585565 coding downstream 44382 26608848 ~ 26711398 (-)
LOC110525620 LOC106585558 coding downstream 191450 26553538 ~ 26564330 (-)
LOC110525627 LOC106585561 coding upstream 9533 26828158 ~ 26876043 (-)
LOC118965120 NA coding upstream 58697 26877322 ~ 26877454 (-)
LOC110525629 LOC106585566 coding upstream 65238 26883863 ~ 26888305 (-)
LOC110525021 nkx31 coding upstream 432433 27251058 ~ 27252377 (-)
LOC110525638 LOC106585585 coding upstream 452196 27270821 ~ 27278551 (-)
G490978 NA non-coding downstream 5217 26746242 ~ 26750563 (-)
G490963 NA non-coding downstream 26296 26707102 ~ 26729484 (-)
G490886 NA non-coding downstream 211194 26543490 ~ 26544586 (-)
LOC110525619 LOC106585557 non-coding downstream 220328 26481087 ~ 26551627 (-)
G491027 NA non-coding upstream 4268 26822893 ~ 26823157 (-)
G491417 LOC106585572 non-coding upstream 220419 27039044 ~ 27039874 (-)
G491475 LOC106585563 non-coding upstream 290749 27109374 ~ 27110138 (-)
G491435 LOC106585567 non-coding upstream 319531 27138156 ~ 27140754 (-)
G491492 NA non-coding upstream 326254 27144879 ~ 27145306 (-)
tmem230b LOC106585554 other downstream 297939 26455731 ~ 26457883 (-)
LOC110525606 LOC106585545 other downstream 472611 26271759 ~ 26283169 (-)
G489511 hmcn2 other downstream 1258291 25496963 ~ 25497489 (-)
G489038 NA other downstream 1649210 25106205 ~ 25106570 (-)
G491291 NA other upstream 6242 26824867 ~ 26867158 (-)
G491539 NA other upstream 397982 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 916371 27734995 ~ 27737024 (-)
LOC110525655 LOC106585601 other upstream 1008606 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 2592590 29411215 ~ 29415314 (-)

Expression


Co-expression Network