G491627 (LOC106585586)


Basic Information

Item Value
gene id G491627
gene name LOC106585586
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27341576 ~ 27349872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU558663
ATTCCAGGTTGTTTAATACAGTGCAATACAATCATTAACAGCAATATTACTAAATTTACATTATCTTATGGAGGTTTGACAGCTGTAACAGGACCTTGTACCAACACTACAGAATGAGGACAGAGACCAATAAATCACCCAGCTCTAGGTGGATTTCCATGGCCATAGATTAAGGTGGGGTTTCACAATGTAGTTTTTCCATTGTGATCGCAAATGTTTTATAACAACATAGGCAATACAATGGACTCACCTTGAATTAACAACATATGAAAGAATAAAGGGTGTGcgtatgtttttgtgtgtgtttgtatatcaCGTCCCCCGAAAAAGCTCCACTGAACCCTCGCCCAACAGGCCCGGACACACAATGAACAGATCCTTAGAGATGGCCAGTGTTTACTGGAGGGTTGTCAGGGACTCCTCCACGCTGAGGTAATAAGGAAGGGATTATTTGCTTTGGCTGCAGAAGAGGGCTCTAATCAGATCACTGCGACATGTGAGTGCAGTATTTTATTTTTCGCCACCCAatgctctccctcccttcttattctctactctactctcctgtatgtctgtctgtctgaccgtcCCTCCCTTCCTGTCATGTTTACTACTCAGTTTCTCCGATTGTAAAAGAGGTATGTGTGAGTAAGTAAAGGAGCTCTTTCCTTCTCTGTTTGCTTGTTTAGTGAACAAGAACTAGTATACAGCCCATAAAAACATGGCTTTTGGGACAGATGCCTGATATCATTTTCCCCTCAATGACAATCTCTTGTTTTTGCATGTCCTCCCTATTCAGTATGTGGGAGAGTAAGTTAGATCAGTCATGTTTGTGGAATTGGATTTCCATGGCAGATTGACACACATCACCAGCTTTATCTGATGGTGCATGACAGTTATTGTAATGAAACGCCAATGGAGGCGAGCCAGGAAAGGTGAAGATAATGCCACGGCACACAGGCCATTCATGGCACAATCCAGCTCTTTATTTCGTTGGGTATTCCATGCTTTATCACTCCAGGAAGGGATAGCTGGGGCATGTGAGGGGTGTATGTGGGCAGGAGGAGCGCTGGTCTAGAGGAGTGAAGGAATATCTCTGGTAACTGATGGAGCTTCACTCCACTGCATTGTGTTCTGAAATAACTCCCTGATGGAGATAAGACACCTTTATATAGAGGACAGACAATGGCAGTTTATATCCGCTGTGCTAAAAATGTTAGTGCCCTACCTGGAAATAAATTGTATACACAATGACCACAGACATTTTAAGAATAAGCCCGTTGTTCCTGAACACTTTATGTCTCATGGCATGTCTCTGATGGAATTTGGTGTGATGCTTTCGTCCATCCCATTATCGTCAAACAGAAGATGAAAACATAAGGCTATTTAATCAATTCTAGAATAATACTTAAACAtaccaaaatgtagaaaaagtcaaggcgtctgaCTCTCATGCAGGAATTGGGGACTGTGGTATGAGCACAGTCGGTCTGGACTAGTCATCCGATACATATTTTACATTCTAGTTTAGATTAAAGACGTCCGTGTGCGGTCCCTTACAGTCTTTAGGAAGCTCATGATGCCCGAGCCGCCGGTGCCCTTCTCCTCCAGTGCCGTGGGCGCCCTGCTGACAGTCTCCTCCTGGGAAATGTTCCCCTGGTTTCGGAGCTGTCGGGCACGGGCAGCGGGCACAGTGATGAAGCGGCTGACCACGTTGATGTGGTAGCTGCGGAGGGCAAGCAGCTTGGTCACACAGAGCTGGAAGGCTGCGGTTAGCGGCTCACAGGCCTGCTGCTGGACAAAGCCTCGCAGGGAGGGCTGCAGAGAGATGTCCTGGATCAGACGCTTGTGGGAAGGGGGCATGTAGTTCCTCATACGGGTCAGAAAGGCACCTGTACATGTAGATAGCACATTCACCCTCACTGGAAATGACGTCTTTAGGATACCTAAGTACAAAATATATGTCTATGTAGAATAAAACAGACGTCTATGTCTGTATAACACGGGACGTGTTACAACGTGTTACAACAACGTGTTACAACTCTTTGTGGTGAACATTTCCTTATTACACAAGAAAAGGCCTGTTAAAAAGTATCTCTGCATAACATTGATGGATCTTTGTGCGGTAATATTTTTTGTACGCACTGACTCTTCTGGACCTTTGCTTTCTTACCACTCTTTGCTTCATGTTTGACACCCAGCAGCTCATCAAAGCAGTGCAGCAGACTGCTCTGGGCAGCACTCCCACCAGAATACTCCATAGGCTCTGCCTGGACGCCCTCATACACCAACCCAGCTGGCATGGAGGAGTTGTCTTTCCACCTGACCAACATACATACAGGTATATAATACAATGAGTATACAAAAACGTTAataacacctgttctttccatgacatagactgaccaggtgaattcaggtgaaagctctgatccctcattgatgtcacatgttaaatccacttcaatcagtgtagatgaaggggaggtgacaggttaaagaaggatatctaagccttgagacaaatgaaacatggattgtgtatgtgtgacattcagaggatgaatgggcaagacaaaagatgtaagtgcctttgaacagggtatcgtagtaggtgccaggcacactggtttgtgtcaagaactgaaatgctgctgggtttttcacgctcaacagtttcccgtgtgtatcaagaatggtccaccacccaaagcacATCCAACCAATTTGACActactatgggaagcattggagtcaacatgcgCCAGCttgaatgctttcgacaccttgtagagtccatgcccagacaaATCGAGACTGTTCAGAgggaaactcaatattaggaaggtgttcctaatgtttggtattctCAGTATATATTCATAAATTACATGTATATTATATGCGTCATTAAACTTTTGTCAGACATAAAAACTAATTTTATATCGTCTAGGCCTAGGGGTATTCAGTACCTACCCAGACAGATAGATCCTCATAATGCCATAGAAGACTTCTGGTTTGACATACACTGGAACAACATAAGAGACATCTATATGCTGAGAATGCAGGTGAACTGGACTGAATGTCAATGCCGTAAAAAATCTAATCTGTTTCAGCTGTAGTACCATGCATCAGTTTAAGTGCATCTGTCATGCCCTGTATGGCCTGGCTGAATTCCTCTAGTGCTCTGGTTACAGTCTCAGCATCACCGCACTGGACCCCATTAATAACCAAAGGAATACTCTGAAACACAACAAAGCATCACACATCAACATAACACTATGGATATTATCTGCTCAGTTATGTGAGCtactgtagtatttttttatttgtgtgtCTTGTCTATTTTGTCTTTACTAGTCACAACTAAAAGACCACTGTTTCCTCTGACGGTTTCATGCCTTTCCTTCTCAGAATGTGCAATACATGTGTGACCAACTGGACATGTGATTATACAGCTCTTTGTGTGTTTCAGGAGAGGCCTCCACCTTAATGGCTGGCACTGCAGCCAGCTCCACTAGCAGAGTGACCATGAAGAACCCTCTCACACTGTCCCCACCAGGTAGCGTGACAAGCAGTTCCAAGTTCCTGGGAAAGCGATGAAAACAACAACTATCACCAAGACCACAATGACAGCTGGTAAGAAGTCAAAGTTCCAGCAAACATTTTATGAGATTTACAAATTGTATTAGCTAACAAGCAAAGACTATTGGAATGTGTGGAATCTACAAAGACAGCTTGTTGGAATCAGTTATTCAAGGCGATACTTACTCCATGTCAAACAGTCTGGTATGGAAGATGAGGTGGTGACatgaaaaataaacacattttcctTAAATATCACTGACAGACAAAAATAGAATTGTGTAACAGGAGACTGTTGAGTATTCTAATCTTACCCCTGTGGATCCCTCTTCCTCCAGTTAGCCAGTACTGCGTCTgcatgggtaaggatgggaggaaGTCCTAGGCGCTGAGACACCTCACAGTATGGAATGGCCAGGTTGCGGGGAAGCATCTTATGGGAGATAAGAGTTCATATCAGAGGGACTTGCTGTTATATAACAGCTGATACTCAGTGTATTGCATGATGACTGGGGTTACGTTTACAGATAGCCAATGTACATACAGTAAGTCCCTAATGTGCATGGATCTAGTAATGATTTGTTGCTCTTCGTATCCCTGGTACCATCTCCAATTcgcacagatccacagataacgcaatctctgttgcactccacactgccctttcccacctgtacaaaaggaacacctatgtgagaatgctgttcattgactacagctcagcgttcaacaacatagtgccctccaagctcatcactaagctaaggaccctgggacggGATCCTAGACTTCCTCACAGACCActtccaggtggtgagggtaggcaacaacaaatctgccacgctgaccattaacacgggggcccctctgggtgcgtgctcagtccactcctgttctccctgttcacccacgtctGGGTGCCCacgcatgactccaacataaTCATTAAGTTTGCCCATTCCTCTGAGCCTTGTAGGAACCTATGGCCAACACACAGAACAGCATAACCTCTAGCTCATTCTGCATGTTTCCATGGAAACCTTAGCAATCCGTGGGAGGATTCCAACAAGCTGATTCCAACAAGCTGTCTTTGTAGATTccacacacgactccaacaccatcattaagtttgccgatgacacaacagtggtaggcctgatcaccgacaacgatgagacagcctatagggagcaggtcagagacctgaccatgtggtgcaaggacaacaacctctccctcaacgtgatcaagacaaaggagatgattgtggactacaggaaaatgaggatCGAGCACGCACTCATTCTCATCGATGCggttgcagtggagcaggttgaaagcttcaagttccttggcgtccacatcaccaacaaactaacatggtccaagcacaccaagacagtcatgaagagggcatgacaaaacctattgcCCGTCcggagattgaaaagatttggaatgggtcttcagatactcaaaaggttttacagctgcacaattgagagcatcctgatgggttgcatcactgcctggtatggcaactgcttgacaTCCGACcacaaagcgctacagagggtagtgcgtacggcccagtacatcactggggccaaactccctgctatccaggacctctgtaccaggcggtaccggagtgccaagtctgtaACCAAATggcacctgaacagcttctacgcccagtgtctacccagactatttacattgactccCTTTGTTATTTATTCCTTTACCGTTTGCACTGCCTTCCTTGCACatgctctatgcacactcactagactctacccacacactacacacaccctatacacacacactcactagactctacccacacactacacacatacacactcactagactctaccaagacactcacacacaatacgtacgctcacacacacacaaaacattctcactagactccacccacacactcacacacactatacacacacactcactagactctgcccacacactcgcacacacactcactagactctgcccacacactctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaactagactccacccacacactcacacacactatacacacactcattagactctgcccacacactctctctcacacacacacacacacacacacacacatacgcactcaCTAgaatacccacacactcacacatacaacacacacacacatacacattcactagactctaccaacaccctcacacatactacactgacactccaactcacacacacactacataagctcacacacataaaacacacacacaaacgcatgcatattgatgccacacacacacacacacaaacacacacacacactagaaagtGTAGACACACTTTCACatttcacatatgctgctgctactgtatattatacagtgcattcagaaagtattcagaaagtattcagacccctttactttttccacattttgttactttacagccttattctgaaattgattcaattgtacaccataatgaaaaagcaaaaactctttttagaaatttttgcaaatgtatatttgAAAAAagaatggaaatatcacatttacataaatattcagaccctttcctcatcACTTTGTTCAaccacatttggcagtgattacagcctcgagtcttcttgggtatgacgctacaagcttggcacatctgtatttggggagtttctcccattattctctgcagatgctatcaagctctgtcaggttggatggggagcgtcgctccacagctatttacaggtctgtccagagatgtttgataggattcaagtccgggatctggctgggtcactcaatgacattcagagactccttcgttgtcttggctgtgtgcttagggtcattgtcctgttggaaggtaaacctttgccccagtctgaggtgctgagcactctggatcaggttttcatcaaggctctctctgtactttgctccgttcatctttcattcgagcctgactagtctcacagtccctgccgctgaaaaacatccccacagcatgatgctaccaccttcatgcttcaccgtagggatggtgccaggtttcctccagatgtgccccttggcattcaggtcaaagagttcaattttggtttgatcagaccagagaatcttgtttctcatggtcagagtcctttaggtgccttttggccaactccaagtgggctgtcaggtgccttttactgaggagtggcgtccatctggccaatctaccataaaggcccgatTGGTGGACTGTTGcatgagatggttgtccttctggaaggttctcccatctccacagtggaactctggagctctgtcagagtgaccatttgggtttttggtcaccttcctgaccaaaggcccttctcccctgattgctcagtttggcccggcagccagctctgggaagagtctttgtggttccaaacttcttccatttaagaatgatggaggccactgtgttcttggggaccttcaatgctgcataaatgttttggtatccttccccagatctgtgcctcaacacaatcctgtctcggagctctaaagacaattccttcaacctcatggcttggtgttttctctgacatgcgctgtcaactgtgggaccttatataaacaggtgtgtgcctttccaaatcttgtccaatcaattgaatttaccaccagtgaactacaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaatttcaagtctcatagcaaagggt

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU558663 True 7461 lncRNA 0.45 2 27341576 27349872

Neighbor

gene id symbol gene type direction distance location
LOC110525637 LOC106585578 coding upstream 120142 27194122 ~ 27221434 (+)
LOC110525636 LOC106585564 coding upstream 158788 27173753 ~ 27182788 (+)
LOC110525635 LOC106585569 coding upstream 175001 27161069 ~ 27166575 (+)
LOC110525634 LOC106585567 coding upstream 201913 27128251 ~ 27139663 (+)
LOC110525633 LOC106585563 coding upstream 226900 27068246 ~ 27114676 (+)
LOC110525640 LOC106585588 coding downstream 2858 27352730 ~ 27371514 (+)
LOC110525641 LOC106585589 coding downstream 118664 27468536 ~ 27477211 (+)
LOC110525642 bin3 coding downstream 138685 27488557 ~ 27543022 (+)
LOC110525646 LOC106585593 coding downstream 229010 27578882 ~ 27583298 (+)
LOC110526216 LOC102300151 coding downstream 253729 27603601 ~ 27613617 (+)
G491204 NA non-coding upstream 125140 27169338 ~ 27216436 (+)
G491184 NA non-coding upstream 222137 27119028 ~ 27119439 (+)
G491145 NA non-coding upstream 249114 27043410 ~ 27092462 (+)
G491029 NA non-coding upstream 517204 26823522 ~ 26824372 (+)
LOC110525020 LOC106585577 non-coding upstream 518404 26820318 ~ 26823178 (+)
G491812 NA non-coding downstream 330030 27679902 ~ 27680786 (+)
G491832 NA non-coding downstream 356773 27706645 ~ 27706942 (+)
G491835 NA non-coding downstream 359993 27709865 ~ 27710155 (+)
G491838 NA non-coding downstream 363179 27713051 ~ 27713349 (+)
G491839 NA non-coding downstream 364267 27714139 ~ 27715189 (+)
G489447 NA other upstream 1657265 25683686 ~ 25684311 (+)
si:dkey-191c17.2 LOC106585342 other upstream 1701884 25638816 ~ 25641178 (+)
G488258 NA other upstream 2402304 24938769 ~ 24939272 (+)
G488078 NA other upstream 2710180 24630969 ~ 24631396 (+)
G488049 NA other upstream 2755263 24579961 ~ 24586313 (+)
LOC110525650 LOC106585598 other downstream 429758 27738953 ~ 27793944 (+)
LOC110525669 NA other downstream 1021850 28370701 ~ 28373267 (+)
G493450 NA other downstream 1639558 28989430 ~ 28990734 (+)
LOC110525701 LOC106585276 other downstream 2522140 29871980 ~ 29880651 (+)

Expression

G491627(LOC106585586) Expression in all Baseline Samples

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G491627(LOC106585586) Expression in each Bioproject

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G491627(LOC106585586) Expression in each Sample
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Co-expression Network