G492146 (LOC106585319)


Basic Information

Item Value
gene id G492146
gene name LOC106585319
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27627891 ~ 27628877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU559230
ACAAGAGTGAGGCCAGTAAAGTAAAGCACATTTTATCCTAGTTTTTACAATCTTCCCAATTTACACTGGCCTTGTCTTGAATAATCTTTTGACTCGCAACATTCTCTTCTGAACAATCAGACATGTGAAGAGGTGTGATGTGAGTGATAGGCTTTTCACTGGAATAAGGGAGTGCATGACAATGATTCATATTTTTATTATGATTCAACACATGTCTTCTTGGACCTCAAAGTGTGGTTTCCAACCATCAGAGATGAGGTTAGTGCTAATCGCAGGTCAGAGAAGCTAGCAATtttctaaaaaaataaatattctcAGGAACAGAGTAACACAACACTGTGTAATCTCCTTCTGTGGGCAGTAGGCTGTATCCACAGAAACCAAAACCTATTCTGCAGACTATTTATTCTTAAGAGACCACATTCTGTTATTTTGGTAAAAAAATGATTCAACTTTATCCACATCAAGAATGGTCTACTTCAACAAGATGCTTTTACGTATCTGAAACCTTACAGCTGCATGTATAGAACAATGATAAACTGAGGTTTAGACCAAGCCTCTTAGTTTTGCTTACAGAGGTAACAGTAGTGGTTGAGTTTGTGGTCACATGGTGACTACTGTGTGCCAGGGACTGGTCCTAGTTGCCCAGCACAGGGCAACGCCAAAGGCTGTGGTACCCAGTACTGCCAGGCTGGCCTTCAGCAATGCACCGGGAGGTCTGTGGAAGTTGGCAGGGCCCATGGTGGCTAACATGGCTGCTGTCACAGTCAGGGTGAACAAGATGGATACTACTGTGTTTATGGCCACGATCTGACCAAATTTAGCAAAAGGCACGATGAcacagaagaagagagggatggtTGAAATGACTGTGGTGACAGCACTGGACACTATGGCAACTCCTACGTGGTTCACTGCGTCTAGGGTCCGTCTCTGCCTTTTAGCTGA

Function

NR:

description
protein dispatched homolog 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU559230 True 948 lncRNA 0.43 2 27627891 27628877

Neighbor

gene id symbol gene type direction distance location
LOC110525644 LOC106585592 coding downstream 49370 27561557 ~ 27578521 (-)
LOC110525643 LOC106585590 coding downstream 67335 27545608 ~ 27560556 (-)
LOC110525639 LOC106579858 coding downstream 276000 27342945 ~ 27351891 (-)
LOC110525638 LOC106585585 coding downstream 349340 27270821 ~ 27278551 (-)
LOC110525021 nkx31 coding downstream 375514 27251058 ~ 27252377 (-)
LOC110525648 LOC106585594 coding upstream 23908 27652785 ~ 27705710 (-)
LOC110525649 LOC106585595 coding upstream 85254 27714131 ~ 27724003 (-)
LOC110525653 NA coding upstream 106118 27734995 ~ 27737024 (-)
LOC110525654 LOC106585600 coding upstream 169393 27798270 ~ 27812882 (-)
LOC118965072 LOC106579843 coding upstream 188699 27817576 ~ 27820202 (-)
G492145 NA non-coding downstream 245 27627280 ~ 27627646 (-)
G492127 NA non-coding downstream 20887 27606685 ~ 27607004 (-)
G492122 NA non-coding downstream 26249 27601345 ~ 27601642 (-)
G492067 NA non-coding downstream 121131 27496177 ~ 27506760 (-)
G491603 NA non-coding downstream 307253 27320408 ~ 27320638 (-)
G492157 NA non-coding upstream 16198 27645075 ~ 27645708 (-)
G492188 NA non-coding upstream 83493 27712370 ~ 27712609 (-)
G492134 NA non-coding upstream 84214 27713091 ~ 27713366 (-)
G492192 NA non-coding upstream 97944 27726821 ~ 27727192 (-)
G492195 NA non-coding upstream 100180 27729057 ~ 27729291 (-)
G491539 NA other downstream 383698 27216607 ~ 27244193 (-)
G491291 NA other downstream 760733 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1076264 26481087 ~ 26551627 (-)
tmem230b LOC106585554 other downstream 1170050 26455731 ~ 26457883 (-)
LOC110525606 LOC106585545 other downstream 1344722 26271759 ~ 26283169 (-)
LOC110525655 LOC106585601 other upstream 198354 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 1782338 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1849778 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1873376 29502192 ~ 29520980 (-)

Expression


Co-expression Network