G492208


Basic Information

Item Value
gene id G492208
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27791875 ~ 27793746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU559308
TTCTAAATGACAATTGGTTACATAGAAATGACAGCTAAATCTGTACTTGCTTATACTGCCTTGCTTTCCAGTCTCCAGTACACTTCTTTTGACCTGAGAGCCTGGCAGGTGCATGTAAAGTCAATAAGTAATGAAAATAGGATTCCTTCACAAAGGAACACAGAGTGACTCCACTTCAAGTTTTCTAGACCCAACATAAAATACCTTCCTTTGCTACACATATTCAGATTGCTAAATATTTGGATGCGCCTTTAACTATACAAAATCAGACATCTGTACATCAATATGTACTTTCATGAACTTGACTCAATACAAAGCCAACTTTCCATGATTGTCTCCAGTCTTCCTCTTATGGACAGACAGAAGGCCTGGTCTATGTTACACCTCATCTGGAGGTATAGTAAAGTGTCTGATGCTGCAGGGGAGATTCTGATCCATTGTGTGGACAAGATCCCAGTCACTGGCacagaaccacacatgcagatgcCTGCCAAcatgtgtgtctgggtgtgatAAGACATATAGAGTGTGTTTACATAAAACTCATCCTGTTTTATGGGCAACTCAAAGCATTACATAATCCAACTTGTGCTTGGAATACTTTGACCCATAGACTGCCAATAGACTTGGCATCAATAGTTGAAGTCGTCATGGCCCGGTTCAGAGGCTAACTATCGTTACCCTATGATATTCTTTGGTCAGTTACACAATATGTAATTagattattttttaaaaatgtgacTTCAATAAACCACATTGAACCACAGGAGCAGCAATGACgaaaacatttttaaacattttttcgGGAAGGCCAAGGATATATACGTCATAACATTTTGAGATGAAATACAACATTGTAAACCCAACTATATAACATTAACCATTGATAGTGCTGATTCTGAGGAATTTGGCATAATTGTGAGGACTCGTATGCACACATTTATTGTAATTTATTCGTGAGGATTATTTCATTCACCACAGCAATCATACTCTGCAAAATAGTTATCCAACACTGAATGGACAATACAAAGACAAAAAGTAAGACATATTTATACACGCTatatgtataaaacattttaggaATGCTATAAACTAACCAAGACCCATCATATGAATCAAACTGTCACATGGATGAACAAATTACTTAAACCACTGGAATGTAATTGCTCTCCAATAACATTCTGTTTTTAATTAAAGGCACATTTAAGGCGTAAAATCATCCTTTATGCTGTCATTAAGAAACATTGTCATCGACTTGACAGTAATTGTGCAATGCAGCAGGGCATTGACACTAGAACATTTTTGTGATTCTAAGAATCCTTCCGCTGCTCATAATAACTTGTTTGTTAGTGAAAAACAAATATTGCATGTGGAAAATTCAGACTGATACATTATTGGAATGTCATTTGGAGACATCTCTCAATTTATTTCTGAACTTAATACCTCAGCCATCTCTCAAGAGCCTCAGTTCATTTTTTAAAACAGGCAACCATCCAACACTTGGCTTTACTTTGTTACGATGATATCGATCCATTCTCTGTTGGTTGTAGAATGGACAGATGTGCTTAGCCCTTATTGCCATGACAAGGTAACTGTGTTTTGTGCAGACCTGACCAGCTATGGACAACATAGATCTGTCTATAAGGAAAGCTGTCCATCAGGTGATATCCGTGGAACCTCAAGTACAACTTCTCTTTGTACTCTTGACCTACATGTGTACATGGGCCACTGTAAACAAATAGCTGACAAGTGTGTGAGCCACACAGATATCCTGGGTGGCAGTAGAATGAGGGGACAGTTGTGATTCCTGTTGATCTTCCTTGTACTAGTACTAGTCAACCCCTTCCCTCCCAATCACTGCTGAGGATTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU559308 True 1872 lncRNA 0.38 1 27791875 27793746

Neighbor

gene id symbol gene type direction distance location
LOC110525653 NA coding downstream 54851 27734995 ~ 27737024 (-)
LOC110525649 LOC106585595 coding downstream 67872 27714131 ~ 27724003 (-)
LOC110525648 LOC106585594 coding downstream 86165 27652785 ~ 27705710 (-)
LOC110525644 LOC106585592 coding downstream 213354 27561557 ~ 27578521 (-)
LOC110525643 LOC106585590 coding downstream 231319 27545608 ~ 27560556 (-)
LOC110525654 LOC106585600 coding upstream 4524 27798270 ~ 27812882 (-)
LOC118965072 LOC106579843 coding upstream 23830 27817576 ~ 27820202 (-)
LOC110525655 LOC106585601 coding upstream 38506 27827231 ~ 27885634 (-)
LOC110525658 LOC100195761 coding upstream 234430 28028176 ~ 28044300 (-)
LOC110525659 LOC106585607 coding upstream 251059 28044805 ~ 28105169 (-)
G492207 NA non-coding downstream 14928 27776556 ~ 27776947 (-)
G492235 NA non-coding downstream 16070 27775598 ~ 27775805 (-)
G492229 NA non-coding downstream 21068 27770598 ~ 27770807 (-)
G492195 NA non-coding downstream 62584 27729057 ~ 27729291 (-)
G492192 NA non-coding downstream 64683 27726821 ~ 27727192 (-)
G492279 NA non-coding upstream 99122 27892868 ~ 27893100 (-)
G492284 NA non-coding upstream 102536 27896282 ~ 27896518 (-)
G492289 NA non-coding upstream 115820 27909566 ~ 27909770 (-)
G492295 NA non-coding upstream 120529 27914275 ~ 27914474 (-)
G491539 NA other downstream 547682 27216607 ~ 27244193 (-)
G491291 NA other downstream 924717 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1240248 26481087 ~ 26551627 (-)
tmem230b LOC106585554 other downstream 1334034 26455731 ~ 26457883 (-)
G494389 LOC106585296 other upstream 1617469 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1684909 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1708507 29502192 ~ 29520980 (-)
G494542 NA other upstream 1881577 29675323 ~ 29675573 (-)

Expression


Co-expression Network