G492902 (LOC106585347)


Basic Information

Item Value
gene id G492902
gene name LOC106585347
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28401868 ~ 28402253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU560057
GTTGAGGGAGGGCATGGTTCTCCTGGGGAACTGCAGTGTGAAGAACCAGACCTTCCAGAAGGCTGTGTGAATCCGCATCACCTTTGACTCTTAGCACAGCCAACAAGACGTGCCCTGTGCTTTCCTGAAAGAGCGCTATGGTGGAGCTGACACAGACATCTTTGAATTTGACATCACCCTGCCCATGCTCGATGAGAAGATTCAATTATTTGTTTTATCTACCTGATAAGTACAGCACCCCATTCTGGGACAATAGCAATGGACAGAACTACAGCATGTTTGTCTTTGACAAGCCTGGGGCATAACGCTGTGGGGCATAATCTGGACAACAGAAAGACTGCACTAGGCTACACTGAACTTCACCGTAACATTTTATGCTTCGACCC

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 3C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU560057 True 386 lncRNA 0.48 1 28401868 28402253

Neighbor

gene id symbol gene type direction distance location
LOC110525668 LOC106585611 coding downstream 31852 28356038 ~ 28370016 (-)
LOC110525666 LOC106585610 coding downstream 49119 28313313 ~ 28352749 (-)
LOC110525665 LOC106585609 coding downstream 92141 28276663 ~ 28309727 (-)
LOC118964856 NA coding downstream 128146 28266817 ~ 28273722 (-)
LOC110525663 lincr coding downstream 142017 28256488 ~ 28259851 (-)
LOC110525671 sld5 coding upstream 831 28403084 ~ 28414473 (-)
arid5a LOC106585613 coding upstream 12484 28414737 ~ 28425225 (-)
dbnlb dbnl coding upstream 30106 28430078 ~ 28448183 (-)
ube2d4 UBE2D4 coding upstream 53337 28455590 ~ 28467865 (-)
zgc:153044 dus18 coding upstream 150011 28552264 ~ 28556013 (-)
G492963 NA non-coding downstream 21956 28379660 ~ 28379912 (-)
G492960 NA non-coding downstream 24637 28376967 ~ 28377231 (-)
G492596 NA non-coding downstream 216060 28185570 ~ 28185808 (-)
G492979 NA non-coding upstream 3791 28406044 ~ 28406324 (-)
G492982 NA non-coding upstream 6812 28409065 ~ 28409279 (-)
G492986 NA non-coding upstream 23511 28425764 ~ 28425969 (-)
G492994 NA non-coding upstream 49237 28451490 ~ 28451787 (-)
LOC110525655 LOC106585601 other downstream 566566 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 664890 27734995 ~ 27737024 (-)
G491539 NA other downstream 1157675 27216607 ~ 27244193 (-)
G491291 NA other downstream 1534710 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1850241 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 1008962 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1076402 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1100000 29502192 ~ 29520980 (-)
G494542 NA other upstream 1273070 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2124433 30526034 ~ 30527686 (-)

Expression


Co-expression Network