G493030


Basic Information

Item Value
gene id G493030
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28573128 ~ 28573835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU560189
TTTCAAAATGTCTGACAGTTTATTTCACAGTGAAAAGGACATGGGGAATGTGTTTTATCAATCCAGTATTCAGTAAATGGCAGTACACAAAGGACAGAGAAGCTAAGGAAGTAAGACCTCTTTCACACTGTGGTGGTCACTGATTAGTTAGGAGTTAAGGATGACCAACCTATGACTGAGCTATTCTGAAAAACTGCTTCATACAGTAGCTTGATCAATTTGATTGTCAAACTTTGACAGTGGTCTCATTTTTAGGCTAAATCACTTGTAAATAGGGGATGAGGACAACATTGCTATGCCATAATGTTACTCAGCAGAAAACTGATAAACATACTCATTAACACTCAGACACAGACAAATCACCTTGTCGTGCACACAGTTTGAGAATAAATGTACACACatgcaggcgcacacacacacacacatgcatgcccaCACatgcacacggacacacacaccaaagtgAGGTGATGGTTTGTTGAACCAAAACCTCAAAACTCTGAGCACATGATTTTAGTTTGTTAGACAATTAGTAGGCTCGTTTTTGTTAGATGATTAGTAGGTTAGTTAGATAATTAGTaggttagttagttagataattagtaggttagttagttagataatGGGGAGCTATCATGTCCCAAAAGAGCGATTCCATGCCAGCGGAAAATATTTTTtctatct
>TU560190
TTTCAAAATGTCTGACAGTTTATTTCACAGTGAAAAGGACATGGGGAATGTGTTTTATCAATCCAGTATTCAGTAAATGGCAGTACACAAAGGACAGAGAAGCTAAGGAAGTAAGACCTCTTTCACACTGTGGTGGTCACTGATTAGTTAGGAGTTAAGGATGACCAACCTATGACTGAGCTATTCTGAAAAACTGCTTCATACAGTAGCTTGATCAATTTGATTGTCAAACTTTGACAGTGGTCTCATTTTTAGGCTAAATCACTTGTAAATAGGGGATGAGGACAACATTGCTATGCCATAATGTTACTCAGCAGAAAACTGATAAACATACTCATTAACACTCAGACACAGACAAATCACCTTGTCGTGCACACAGTTTGAGAATAAATGTACACACatgcatgcccaCACatgcacacggacacacacaccaaagtgAGGTGATGGTTTGTTGAACCAAAACCTCAAAACTCTGAGCACATGATTTTAGTTTGTTAGACAATTAGTAGGCTCGTTTTTGTTAGATGATTAGTAGGTTAGTTAGATAATTAGTaggttagttagttagataattagtaggttagttagttagataatGGGGAGCTATCATGTCCCAAAAGAGCGATTCCATGCCAGCGGAAAATATTTTTtctatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU560189 False 684 lncRNA 0.38 2 28573128 28573835
TU560190 True 660 lncRNA 0.38 3 28573128 28573835

Neighbor

gene id symbol gene type direction distance location
zgc:153044 dus18 coding downstream 17115 28552264 ~ 28556013 (-)
ube2d4 UBE2D4 coding downstream 105263 28455590 ~ 28467865 (-)
dbnlb dbnl coding downstream 124945 28430078 ~ 28448183 (-)
arid5a LOC106585613 coding downstream 147903 28414737 ~ 28425225 (-)
LOC110525671 sld5 coding downstream 158655 28403084 ~ 28414473 (-)
LOC110525678 LOC106585621 coding upstream 415572 28989407 ~ 29010716 (-)
LOC110525679 LOC106585622 coding upstream 449373 29023208 ~ 29070012 (-)
LOC110526490 LOC106580375 coding upstream 496881 29070716 ~ 29398888 (-)
LOC110525681 hectd4 coding upstream 837369 29411204 ~ 29483533 (-)
LOC110525683 NA coding upstream 840926 29414761 ~ 29415342 (-)
G493037 NA non-coding downstream 2575 28570237 ~ 28570553 (-)
G493036 NA non-coding downstream 5219 28565200 ~ 28567909 (-)
G493062 NA non-coding downstream 7995 28564379 ~ 28565133 (-)
G493053 NA non-coding downstream 33303 28539576 ~ 28539825 (-)
G493040 NA non-coding downstream 57210 28514915 ~ 28515918 (-)
G493063 NA non-coding upstream 1238 28575073 ~ 28575355 (-)
G493064 NA non-coding upstream 1581 28575416 ~ 28575736 (-)
G493068 NA non-coding upstream 14543 28588378 ~ 28588580 (-)
G493082 NA non-coding upstream 44674 28618509 ~ 28618724 (-)
G493086 NA non-coding upstream 49217 28623052 ~ 28623328 (-)
LOC110525655 LOC106585601 other downstream 737826 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 836150 27734995 ~ 27737024 (-)
G491539 NA other downstream 1328935 27216607 ~ 27244193 (-)
G491291 NA other downstream 1705970 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 2021501 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 837380 29411215 ~ 29415314 (-)
LOC110525684 LOC106585295 other upstream 928418 29502192 ~ 29520980 (-)
G494542 NA other upstream 1101488 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 1952851 30526034 ~ 30527686 (-)

Expression


Co-expression Network