G494389 (LOC106585296)


Basic Information

Item Value
gene id G494389
gene name LOC106585296
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29411215 ~ 29415314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU561692
TGAATAGGTAAGAGGGTAGCGCGAGTGATGATGGAGCGAGCACCTGTTAAAAGTGGCTCCCATCGTCAACACTCACAGGGCTAAGAGGAGGTGCTATTCTAGTGACTCCAACAATAAGGACAGGAGTCAAACCACATCATTAGTGTAAATAATGGATTTCATTATCACAGCTTTTTTTCACTGGATCTCAAAGCACTACATGTACTAGCTTGGTCACTGACAGAGGTTAACAGGTATTTGTACTAGCTTGGTCACTGACAGAGGTTAACAGGTATTTGTACTAGCTTGGTCACTGACAGTGCTTAACAGGTATTTTTACTAGCTTGGTCACTGACAGTGCTTAACAGGTATTTTTACTAGCTTGGTCACTGACAGTGCTTAACAGGTGTTTTTCATAAATACATGGTTCTTAAAGCATACTATCAATCAATACTTTATAGAATAGGCAGGCAAGTGATATTGAACAAACATTCTGAAATGAACCCCTGTTATCACTCCCTCCGTAGGCCCACACCATGTACCAGGTGGGTCTAATGGAGACAGACCAGCACATTGAGTTCTTCTGGACGGCCCTGGAGATGTTCACACAGGAGGAGCTCTGCAAGTTCATAAAGTTTGCCTGCAACCAGGAGCGCATCCCCTTTACCTGCCCCTGCAAGGACGGGGGCCCGGACACTGCCCACGTACCCCCCTACCCCATGAAGATCGCCCCTTCGGACGGGGCAGCAGGTTCGCCAGACTCTCGCTACATCCGGGTGGAGACCTGTATGTTTATGGTGAAGCTGCCCCAGTACAGCTCCCTGGATGTGATGCTGGAGAAGCTGCGCTACTCCATCCACTACCGTGAGGACCCTCTCAGCGGCTAAAGGGACCTGATGGGTGGAGTACACCACCTCCATATGATGCCGCTTCAACACCAACCCTACTATTTCTTACCCATACAGCCCCACCCTTTCATCACCCCATCCCCCGCCCACCTTTACCTCCGCCCTCTCCTGAACCTTCAGCTGGGACTACCCACAGAACAGAAGGCCAGCCTGCTTTACCAAGAACACACTGAAGCTTTTCCTTTCTTGGCTTGTTTTATGTTTGGCTTTGTACCAGCGCTTCATTTCAATAACATTGTAATCAGGTTGAGCCTTTCAGGAGTGTGTTTTGACTCATGTTTTCAGACCTGATATAGGGGAGTTCAGCCCCACTTGCCTTGACACTGATGTTGGTGTCTCTTCTGGTTGCACTGAGTTTTGGAGTGACATTGAGGTAACTCTTTGATTACTACACTGAGTGGGAGGGAGCTGTGACAGGGCACATACCATTATTGTTTATTGGGGAAGTTAATCTCTTCCACCTTATTTCCCCTCACTTTTCTTTATtcttcctatcctccctctctttcagagGTCCTTACAGTTCCCCTCCCACACACTACCAGAGGGGACTATCTTTCTAAGGCATGCCTTTACCACAAGCAGCACTTCCTCAAAAATCGGAGAGGGAGACTCTGTGTGAAAAGGGAACCCCAAATATTCCTCTGGAAGCAAGAGTTGAGTATTGTTTGATGTTAGAGTTCATTTTAGATATTAAGTGGACTACTATGATGCTGCCTATTTATTACCAGTTCAGCTCTCTGCATTCAAAACCTTGACAAGCGCTGTATAGGACATTATATAGTTACTGCCTGTAAAGTTGGACTGCTAAAGGACAAAACTAGCTATCTGCCTATATTATAcggtgaatatattttattcaAATCTATTAAGAGGGTATATAAGTCTTGTAAAAAGTCATTTTAATCTATTAAGTTGCAGCTTTGAGTTTAAGGTATCCTAGTAGCTGTGGCAGAAGGGTAAGGTCACGTACACTGAAGCTGGACTACCAGGCTAAAGCTCTACCTGGTTGCCAGATCTGGCCTTCTGTGTTTCCAGATCTCCTATACTTGCATTTCAGGTTGTGAAACCTGTGTTTCTTtgtgaaatgagagagagatgttctCCTGAGCTGCTTGTGTGCTACTGCTACTGAATGTGGGCTGACTCCCCTTGCccaacacacaatacacacaccagGGGGTCGAATTCACTTTCATTTTGCCTTTTTATAGATTTCCTGTGATGAATGAGCAggatttctgtttgtttttttgttttattttacccaTAACCAAAATGTTTAGCTGTGTAaagaaaaaatgtaaatatactTCTACATTATATTTGATGGCAGTTTTATAAAATTGTTGCATCACTTCaccaattattatttatttttttctgcaCTATTCTTCCAgggaaaaaatattatttaaaaatgAGCTAACTAGGATATTCTTTATTGGATATCCAGTTTGTTggtttttaattttttacaaatgttgaAATTACCAGTAAAATATCACCTTAATGTCTTGCAGGGCCGGATTACCGAACGGGCACGCAGGgcaaccccccccctccccccaaaaatagCATAtgatagcaaaatgtgtagaattgcaggaaattagctttaaaatgggAAAATCTTATCGTAGCCCCTTGGCAAAaagtgtagaattgcagtaaattCGCTTTAACACTGCAAAAAAAATCTTAGCCTCATGACTAAATGTGTAGAACATAattataaaactgcacatttttctctgcACCATGGCTTACTGTGTTGAAATGCATTATGTTTTTGGGGACGTCGGTTCCCCCGGGGCCCCAAATGCAGTCGTCCGGCCCTGATGTCTTGTAACTCAGATGGATTCTATCACTCATTCTCTTCTACTCCATGGTGAAACATGTTTTCTTGTGTGAGTAAAACAGCCGTTTGACTTGGACGGGACCTGAAGAACACAACGACAGTTACCGCAAAATATTTGAGATGGATGTTTGGATTGCTTGCCAATTTAGTTTTGGTTTTGTTCTTTTAAAGGGTAAATCGCTGCTAACAAGGACGCTCCTTCTATTCCGACCTCTTTTGGAGGAGTAGAACAGACCATTACAAAGGACATTCATACGAAGAGGTGTTGAGAGAAGAAAATGTGTTCTGTACATTTACTTGATATTTATTACAATTATTTATGGTTGCATTAAATTAACTTTTACTGTCTTACCTCTGCACATCAAACATAACACAGATCTTTAAAATGGACTATACAGGGGTAAAGGATAAGATGGAGTTTGAGATTTCTGTGTCACAATAAAACATGTCT

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase HECTD4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561692 True 3199 TUCP 0.42 4 29411215 29415314

Neighbor

gene id symbol gene type direction distance location
LOC110526490 LOC106580375 coding downstream 12327 29070716 ~ 29398888 (-)
LOC110525679 LOC106585622 coding downstream 341203 29023208 ~ 29070012 (-)
LOC110525678 LOC106585621 coding downstream 400499 28989407 ~ 29010716 (-)
zgc:153044 dus18 coding downstream 855202 28552264 ~ 28556013 (-)
ube2d4 UBE2D4 coding downstream 943350 28455590 ~ 28467865 (-)
LOC110525684 LOC106585295 coding upstream 86878 29502192 ~ 29520980 (-)
LOC110525685 LOC106585294 coding upstream 111469 29526783 ~ 29575598 (-)
LOC110526522 LOC106585290 coding upstream 180102 29595416 ~ 29596809 (-)
LOC110525693 NA coding upstream 234889 29650203 ~ 29654088 (-)
LOC110525694 LOC106585282 coding upstream 290745 29706059 ~ 29754403 (-)
G494378 NA non-coding downstream 3499 29399840 ~ 29407716 (-)
G494376 NA non-coding downstream 17308 29393704 ~ 29393907 (-)
G494359 NA non-coding downstream 36937 29374023 ~ 29374278 (-)
G494357 NA non-coding downstream 41992 29368975 ~ 29369223 (-)
G494356 NA non-coding downstream 42782 29368154 ~ 29368433 (-)
LOC110525681 hectd4 non-coding upstream 37270 29411204 ~ 29483533 (-)
G494401 NA non-coding upstream 40045 29455359 ~ 29455568 (-)
G494402 NA non-coding upstream 43967 29459281 ~ 29459582 (-)
G494404 NA non-coding upstream 48577 29463891 ~ 29464214 (-)
G494496 NA non-coding upstream 195509 29610823 ~ 29611022 (-)
LOC110525655 LOC106585601 other downstream 1575913 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 1674237 27734995 ~ 27737024 (-)
G491539 NA other downstream 2167022 27216607 ~ 27244193 (-)
G491291 NA other downstream 2544057 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 2859588 26481087 ~ 26551627 (-)
G494542 NA other upstream 260009 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 1111372 30526034 ~ 30527686 (-)
G495554 NA other upstream 1130088 30545402 ~ 30549450 (-)

Expression


Co-expression Network