G493733 (LOC106585296)


Basic Information

Item Value
gene id G493733
gene name LOC106585296
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29450621 ~ 29451309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU560967
CACCACTTCTTACTTGATGCTGGGACGAAACTGTGGTCGCCCCCTGCCGGACACCTCTCGTAGCCGGCTCATGATGCCTGGAGGCAGGCGGATGCGGGGCAGGTCAAAGTAGGCCCCAGGCATGAGGCCCGGGGGAGGGATGAGCACGTCAGAGGGGTAGGTGAACTCCCGGTCCTCCTCGATGGTGAGGGGTAGCGGAGAGGGACTGGGGGTTAGGGCTGGAGAGATGGCACCATTAGCTTCCACCTGCCATTGGCACCTGGAGGAAATGGATAGCATTTAGTCTCGGCTGTCCTGGTAACCACTCTCTGCCACGGTGTCACCGGTGTTATTTTACTAGGGTGTTACTATTTAGTTGGTTATAGCGGTATATGACTGTGCTGCGACATTGCAGTGCATTCGTGCCATCTATAGTGTGTGCTCTGTATCATTCGCCATATATGCCGAGTCACCTTTGGAGCAGCTTGGAGCAGAGCAGGTCATGGCAGGCGTCCTCCTCTCGGGTTACTTCAGGTCCGTTGTAGAGGATGCGGAGCATGGAGCAGGCCAGTACAGACAGACCCAACGCCAGGTCTGCCAGGAAGGGGAGACCCCCAGAGACATCCTCTGATGATTCCTGTAGCGGGAAAACAGAGACAGATCTACGTAACAATGTCTGGGTGTGTATGTCAAACATGGCAGCAACATAC

Function

NR:

description
probable E3 ubiquitin-protein ligase HECTD4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU560967 True 689 lncRNA 0.56 1 29450621 29451309

Neighbor

gene id symbol gene type direction distance location
LOC110525680 LOC106585298 coding upstream 43611 29403750 ~ 29407010 (+)
LOC110525677 NA coding upstream 887297 28556805 ~ 28563758 (+)
tgoln2 LOC106585618 coding upstream 898460 28543021 ~ 28552161 (+)
LOC110526333 LOC106585616 coding upstream 915036 28487813 ~ 28535585 (+)
LOC110525670 LOC106585612 coding upstream 1050298 28392387 ~ 28400323 (+)
trnaa-ugc-16 NA coding downstream 113818 29565127 ~ 29565202 (+)
LOC110525686 LOC106585293 coding downstream 124722 29576031 ~ 29586860 (+)
LOC110525687 tmed2 coding downstream 138171 29589480 ~ 29594567 (+)
gtf2h3 gtf2h3 coding downstream 146749 29598058 ~ 29602770 (+)
LOC110526542 NA coding downstream 156424 29607733 ~ 29609559 (+)
G493690 NA non-coding upstream 35298 29414770 ~ 29415323 (+)
G493689 NA non-coding upstream 51844 29398476 ~ 29398777 (+)
G493678 NA non-coding upstream 63513 29386885 ~ 29387108 (+)
G493676 LOC106583873 non-coding upstream 71829 29378543 ~ 29378792 (+)
G493675 NA non-coding upstream 73832 29376551 ~ 29376789 (+)
G493735 LOC106585296 non-coding downstream 1533 29452842 ~ 29453254 (+)
G493736 NA non-coding downstream 2033 29453342 ~ 29453602 (+)
G493737 NA non-coding downstream 6212 29457521 ~ 29457920 (+)
G493743 NA non-coding downstream 16223 29467532 ~ 29467770 (+)
G493746 LOC106585296 non-coding downstream 18425 29469734 ~ 29469961 (+)
G493450 NA other upstream 459887 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1077429 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1659051 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 1907626 27488557 ~ 27543022 (+)
G489447 NA other upstream 3766310 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 420703 29871980 ~ 29880651 (+)
G494065 NA other downstream 633275 30084584 ~ 30129769 (+)
G494946 NA other downstream 870713 30322022 ~ 30344847 (+)
G494943 NA other downstream 984653 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 1066667 30517976 ~ 30523383 (+)

Expression


Co-expression Network