G493746 (LOC106585296)


Basic Information

Item Value
gene id G493746
gene name LOC106585296
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29469734 ~ 29469961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU560980
CACCAGGATGCAGCGGATGATGCAGGTGTCCCTGTTGACCATGGCTTTCTCCATGATGTCGCAGATGCTGCTGAAGTGGCGAGCCTCGATGGGGTGCTGCTTGCCCATGAGGGCGCCCAGGGGAAAGCTGCTGCTGCTGGCTGCCAGAAGGTTGAGCTGGTGGATGCACATGGCGCCCACATGGTGAAGCAGCTGGTTGATCACCTCTCCGGTGGCCACGGTCTCCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU560980 True 228 lncRNA 0.61 1 29469734 29469961

Neighbor

gene id symbol gene type direction distance location
LOC110525680 LOC106585298 coding upstream 62724 29403750 ~ 29407010 (+)
LOC110525677 NA coding upstream 906410 28556805 ~ 28563758 (+)
tgoln2 LOC106585618 coding upstream 917573 28543021 ~ 28552161 (+)
LOC110526333 LOC106585616 coding upstream 934149 28487813 ~ 28535585 (+)
LOC110525670 LOC106585612 coding upstream 1069411 28392387 ~ 28400323 (+)
trnaa-ugc-16 NA coding downstream 95166 29565127 ~ 29565202 (+)
LOC110525686 LOC106585293 coding downstream 106070 29576031 ~ 29586860 (+)
LOC110525687 tmed2 coding downstream 119519 29589480 ~ 29594567 (+)
gtf2h3 gtf2h3 coding downstream 128097 29598058 ~ 29602770 (+)
LOC110526542 NA coding downstream 137772 29607733 ~ 29609559 (+)
G493743 NA non-coding upstream 1964 29467532 ~ 29467770 (+)
G493737 NA non-coding upstream 11814 29457521 ~ 29457920 (+)
G493736 NA non-coding upstream 16132 29453342 ~ 29453602 (+)
G493735 LOC106585296 non-coding upstream 16480 29452842 ~ 29453254 (+)
G493733 LOC106585296 non-coding upstream 18425 29450621 ~ 29451309 (+)
G493747 NA non-coding downstream 778 29470739 ~ 29471017 (+)
G493749 NA non-coding downstream 2076 29472037 ~ 29532710 (+)
G493779 NA non-coding downstream 56831 29526792 ~ 29530208 (+)
G493835 NA non-coding downstream 142300 29612261 ~ 29612480 (+)
G493847 NA non-coding downstream 155988 29625949 ~ 29626207 (+)
G493450 NA other upstream 479000 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1096542 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1678164 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 1926739 27488557 ~ 27543022 (+)
G489447 NA other upstream 3785423 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 402051 29871980 ~ 29880651 (+)
G494065 NA other downstream 614623 30084584 ~ 30129769 (+)
G494946 NA other downstream 852061 30322022 ~ 30344847 (+)
G494943 NA other downstream 966001 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 1048015 30517976 ~ 30523383 (+)

Expression


Co-expression Network