G493835


Basic Information

Item Value
gene id G493835
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29612261 ~ 29612480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU561080
ggacccctacaaatcagccgggcttgACATCGATCTTCATaataagtggaccaaagcgcagcgtgatctgggttccacatctttttattACTAAGTGAAACTCacagcaaaacaaaaacaataatctCAAATGAAACATGAAGCAAACAAtagtgctaacaggcaactaaacataaacaatatcccataacccacaggtggaaaaaatgctacttacagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561080 True 220 lncRNA 0.39 1 29612261 29612480

Neighbor

gene id symbol gene type direction distance location
LOC110526542 NA coding upstream 2702 29607733 ~ 29609559 (+)
gtf2h3 gtf2h3 coding upstream 9491 29598058 ~ 29602770 (+)
LOC110525687 tmed2 coding upstream 17694 29589480 ~ 29594567 (+)
LOC110525686 LOC106585293 coding upstream 25401 29576031 ~ 29586860 (+)
trnaa-ugc-16 NA coding upstream 47059 29565127 ~ 29565202 (+)
psmd9 psmd9 coding downstream 4030 29616510 ~ 29621427 (+)
LOC110525691 LOC106585288 coding downstream 25314 29637794 ~ 29646752 (+)
LOC110525692 LOC106585286 coding downstream 40039 29652519 ~ 29692486 (+)
LOC110526646 NA coding downstream 91615 29704095 ~ 29705963 (+)
LOC110525698 LOC106585278 coding downstream 200132 29812612 ~ 29844159 (+)
G493749 NA non-coding upstream 79551 29472037 ~ 29532710 (+)
G493779 NA non-coding upstream 82053 29526792 ~ 29530208 (+)
G493747 NA non-coding upstream 141244 29470739 ~ 29471017 (+)
G493746 LOC106585296 non-coding upstream 142300 29469734 ~ 29469961 (+)
G493743 NA non-coding upstream 144491 29467532 ~ 29467770 (+)
G493847 NA non-coding downstream 13469 29625949 ~ 29626207 (+)
G493853 LOC106581475 non-coding downstream 22437 29634917 ~ 29635374 (+)
G493858 NA non-coding downstream 32796 29645276 ~ 29645533 (+)
G493876 NA non-coding downstream 55379 29667859 ~ 29668146 (+)
G493877 NA non-coding downstream 59579 29672059 ~ 29672335 (+)
G493450 NA other upstream 621527 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1239069 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1820691 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2069266 27488557 ~ 27543022 (+)
G489447 NA other upstream 3927950 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 259532 29871980 ~ 29880651 (+)
G494065 NA other downstream 472104 30084584 ~ 30129769 (+)
G494946 NA other downstream 709542 30322022 ~ 30344847 (+)
G494943 NA other downstream 823482 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 905496 30517976 ~ 30523383 (+)

Expression


Co-expression Network