G493853 (LOC106581475)


Basic Information

Item Value
gene id G493853
gene name LOC106581475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29634917 ~ 29635374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU561098
gaatagacaacaggtggaaattataggcaattagcaagacacccccaatataggagtggttctgcaggtgataaccacataccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaatgctggcggtgctttcattctagtggtagcatgagacgtagtctacaacccacacaagtgagttgtggcaagaaggtttgctgtgtctgtcagcgtagtgtccaaagcatggaggcgctaccaggagacaggccagtacatcaggagacgtggaggaggccgtaggagggcaacaacccagcagtaggaccgctacctccgcctttgtgcaaggaggagcactgccagagccctgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaacggtcagaaacagactccatgagggtggtatgagggcccgtcgtcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561098 True 458 lncRNA 0.52 1 29634917 29635374

Neighbor

gene id symbol gene type direction distance location
psmd9 psmd9 coding upstream 13490 29616510 ~ 29621427 (+)
LOC110526542 NA coding upstream 25358 29607733 ~ 29609559 (+)
gtf2h3 gtf2h3 coding upstream 32147 29598058 ~ 29602770 (+)
LOC110525687 tmed2 coding upstream 40350 29589480 ~ 29594567 (+)
LOC110525686 LOC106585293 coding upstream 48057 29576031 ~ 29586860 (+)
LOC110525691 LOC106585288 coding downstream 2420 29637794 ~ 29646752 (+)
LOC110525692 LOC106585286 coding downstream 17145 29652519 ~ 29692486 (+)
LOC110526646 NA coding downstream 68721 29704095 ~ 29705963 (+)
LOC110525698 LOC106585278 coding downstream 177238 29812612 ~ 29844159 (+)
LOC110525700 rilpl2 coding downstream 221354 29856728 ~ 29863079 (+)
G493847 NA non-coding upstream 8710 29625949 ~ 29626207 (+)
G493835 NA non-coding upstream 22437 29612261 ~ 29612480 (+)
G493749 NA non-coding upstream 102207 29472037 ~ 29532710 (+)
G493779 NA non-coding upstream 104709 29526792 ~ 29530208 (+)
G493747 NA non-coding upstream 163900 29470739 ~ 29471017 (+)
G493858 NA non-coding downstream 9902 29645276 ~ 29645533 (+)
G493876 NA non-coding downstream 32485 29667859 ~ 29668146 (+)
G493877 NA non-coding downstream 36685 29672059 ~ 29672335 (+)
G493878 NA non-coding downstream 40027 29675401 ~ 29675677 (+)
G493879 NA non-coding downstream 41186 29676560 ~ 29676860 (+)
G493450 NA other upstream 644183 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1261725 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1843347 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2091922 27488557 ~ 27543022 (+)
G489447 NA other upstream 3950606 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 236638 29871980 ~ 29880651 (+)
G494065 NA other downstream 449210 30084584 ~ 30129769 (+)
G494946 NA other downstream 686648 30322022 ~ 30344847 (+)
G494943 NA other downstream 800588 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 882602 30517976 ~ 30523383 (+)

Expression


Co-expression Network