G494540 (LOC106585286)


Basic Information

Item Value
gene id G494540
gene name LOC106585286
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29673676 ~ 29674225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU561863
ACGAGGAGATGGCAGGAACAATCCTTTGCACACGGCGTGTCTTTTTGTTGGAGCAAGAGGGCTGGATGGGTCTGGGCAGGGCGAAGGTCTGGGGGTGTTGTGGGGTGGCGGCAGGCGAGGGTGGCAGGGGCTGGAGGGGTGGGGTTGTAGGTTCACGGTTTAGGGAGCTGAAGTCAGAGCTGTGACtgaaggtggtggcagcatcactggGTAGAACAGTGGAGGTGGTTGTATGTGTGATGACAGATGAGGGCGGGGAACCGTCCAGGCTTGTGGCATCGTCTAGGGTTGGGGGGGCTACTAGTGTTGGGGTGGCAGCACCCTGGCAGGTCTGGGTGTGCCGCACCGTGGGAAGGGCTGAGGTTTGCCTGAGGGAGGAGCCTCCAGCCTGAGCACTAGGGGGCACCGGCCCAGAGAACAGAGGCATGTAGTTCTGTACGTAAGAGGGGCTTCCACTGGTTTGATTGGACATGAGGGAGGAGATAGTCAGGGGGGCTGGGGAGGCGATAAGTCTGTGGTCATGACTGACGGACGGGAGGTCAGCTGAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561863 True 550 lncRNA 0.61 1 29673676 29674225

Neighbor

gene id symbol gene type direction distance location
LOC110525693 NA coding downstream 19900 29650203 ~ 29654088 (-)
LOC110526522 LOC106585290 coding downstream 76867 29595416 ~ 29596809 (-)
LOC110525685 LOC106585294 coding downstream 98078 29526783 ~ 29575598 (-)
LOC110525684 LOC106585295 coding downstream 152696 29502192 ~ 29520980 (-)
LOC110525683 NA coding downstream 258334 29414761 ~ 29415342 (-)
LOC110525694 LOC106585282 coding upstream 31834 29706059 ~ 29754403 (-)
LOC110525696 LOC106585281 coding upstream 80677 29754902 ~ 29760372 (-)
LOC110525697 rsrc2 coding upstream 95699 29769924 ~ 29786928 (-)
LOC118965073 NA coding upstream 124284 29798141 ~ 29811783 (-)
kmt5ab kmt5a coding upstream 188973 29863198 ~ 29870407 (-)
G494537 NA non-coding downstream 6139 29667282 ~ 29667537 (-)
G494530 NA non-coding downstream 15052 29658349 ~ 29658624 (-)
G494517 NA non-coding downstream 36710 29636636 ~ 29636966 (-)
G494516 NA non-coding downstream 37150 29636281 ~ 29636526 (-)
G494544 NA non-coding upstream 3277 29677502 ~ 29678117 (-)
G494546 NA non-coding upstream 5857 29680082 ~ 29680686 (-)
G494556 NA non-coding upstream 18805 29693030 ~ 29695738 (-)
G494621 NA non-coding upstream 168558 29842783 ~ 29848905 (-)
LOC110525681 hectd4 other downstream 190330 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 258362 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 1838374 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 1936698 27734995 ~ 27737024 (-)
G494542 NA other upstream 1098 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 852461 30526034 ~ 30527686 (-)
G495554 NA other upstream 871177 30545402 ~ 30549450 (-)
G495560 NA other upstream 900893 30575118 ~ 30575573 (-)
G496772 NA other upstream 1987168 31661393 ~ 31661618 (-)

Expression


Co-expression Network