G493879


Basic Information

Item Value
gene id G493879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29676560 ~ 29676860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU561124
ctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatgtacactaAACTCAGTCATGTGTCACAGGGTGCTTGCCTCCTGTCAAACATAAGCTATCAATCTATTAGCTCTACATGTGTATACAGGATGTGGCATGGTAACACATTCATACAGTGTTTTGGAATGTTTACAGTACTGATCTGCTTTCCATAAAATTAATGAATTGTCTTTAATGTGAGTTGGTGCTCACTGGTGTAGCAGTCTTTTTTATGATGGTTTTTGGTAAGTGTGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561124 True 301 lncRNA 0.39 1 29676560 29676860

Neighbor

gene id symbol gene type direction distance location
LOC110525691 LOC106585288 coding upstream 29808 29637794 ~ 29646752 (+)
psmd9 psmd9 coding upstream 55133 29616510 ~ 29621427 (+)
LOC110526542 NA coding upstream 67001 29607733 ~ 29609559 (+)
gtf2h3 gtf2h3 coding upstream 73790 29598058 ~ 29602770 (+)
LOC110525687 tmed2 coding upstream 81993 29589480 ~ 29594567 (+)
LOC110526646 NA coding downstream 27235 29704095 ~ 29705963 (+)
LOC110525698 LOC106585278 coding downstream 135752 29812612 ~ 29844159 (+)
LOC110525700 rilpl2 coding downstream 179868 29856728 ~ 29863079 (+)
LOC110525701 LOC106585276 coding downstream 195120 29871980 ~ 29880651 (+)
LOC110525702 LOC106585272 coding downstream 207496 29884356 ~ 29963247 (+)
G493878 NA non-coding upstream 883 29675401 ~ 29675677 (+)
G493877 NA non-coding upstream 4225 29672059 ~ 29672335 (+)
G493876 NA non-coding upstream 8414 29667859 ~ 29668146 (+)
G493858 NA non-coding upstream 31027 29645276 ~ 29645533 (+)
G493853 LOC106581475 non-coding upstream 41186 29634917 ~ 29635374 (+)
G493881 NA non-coding downstream 6644 29683504 ~ 29730743 (+)
G493884 NA non-coding downstream 17878 29694738 ~ 29696254 (+)
G493868 NA non-coding downstream 36548 29713408 ~ 29713709 (+)
G493902 LOC106585281 non-coding downstream 78050 29754910 ~ 29758001 (+)
G493903 LOC106585281 non-coding downstream 82399 29759259 ~ 29760318 (+)
G493450 NA other upstream 685826 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1303368 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1884990 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2133565 27488557 ~ 27543022 (+)
G489447 NA other upstream 3992249 25683686 ~ 25684311 (+)
G494065 NA other downstream 407724 30084584 ~ 30129769 (+)
G494946 NA other downstream 645162 30322022 ~ 30344847 (+)
G494943 NA other downstream 759102 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 841116 30517976 ~ 30523383 (+)

Expression


Co-expression Network