G494556


Basic Information

Item Value
gene id G494556
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29693030 ~ 29695738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU561879
AAAAACAAATACTAAATATCACTCTGCAACAGTCAGGAGTTACAATAATAAAGGAGTAGTTTCTCTAAATGCCTCCCACAATGTACCAATGTAGGTCAGGGCTTCTGAGACTAATAAAGGAGAGACGTGAAATTAAAGTTTCTACTTTTGCAATATAACCTATAATGTTTAACTGTATCTTAGACAAATACGATCTGAACTATGAGAAGAGCTATGTATCTTTGACAGGCTAGCATAACGCTGTCATAAGCATACCTTAGACATAAGGATGGCTTGattgtaagaaacaaaaaaagaacATCATACATATGCtatgtatgtaacctgtatgcTTACAGTATGGCTGATGCTTTCTTCATCATAAAATATCCTGATTGTGTTTGTTTGGTTATAGGGAGCAGCATAAAAAGCTCACCAGCGCATCCCTGAGAGAACTCAATGTATCCACACTCACCGTCATACaacagagaaaacaacaacagaacccacaACTCATTCAAGAGATATTTCCCTTTTATGACAAATCATATGCCGTTTTCTTTGTTTCATACCTTAAAATAACAATAAGAGctcaataaaaacaaaaataccaAATAAAACGAGCAAGCACGGTAAAACACCTCTGGTTCAACACCATGTTATTTACCTGccaaagtacagtgccttcagaaagtattcatacttaCTCCATTTTTCTTTggtgtgttaaagcctgaattcaaaatggattcaatctattttttctctctcacccatctacacacaatacctcataatgacaaagtgaaaacatgtttttagaaatgtttgcaaatttattgaaaacaaaatatgtaaatgagatatttctgtaagtattcacacccgagtcaaaactttgtagaaggacctttggcagcaattaaagTTGCGCGTCTTTCAGGGTAAATCTctgagctttccacacctggtttATGCAACATTTgattcaaaattcttcaagctctgtcaatttggttgtggatcattgctaaacaaccattttcaggtctttccatagatttcaagtagatttaagtcaaaactgtaactctgcctCTCAGAAACATTcaccgtcttcttggtaagcaactccagtgtagatttggtcttgtgttttaggttattgtcctgctgaaaggtaaattcatctcccagtgtctgttggaaagcagactgaaccaggttttcctctaggattttgcctgtgcttagctacattccatttcttttttaacCTGAAAAACTCtctagtccttaacgattacaagcataatGTTGGATTCTagtttgaaatatacttattaATGTTACCATACTAGAAGTTATTGATTACTTTACATGTATAAGGAATGCATACGTTTGGGTCTATAGAGAGTGTAAGAACTAGGTGTATTGAAAGTTACTGAGTGAGGAAGGGGGAGTGCAGAAAGTTTACATTCTCAAAACATGGTATTGTTAAATCTCATGGCTCCTAAAGAGAGAAGCAAACTGCAACAGTCTGGTTTCAGTCACTGATAAGGTAGGACAGCCGTGGAgtagggaggagtgaggaatttgTCCCGAGGTCGGGTCAGATGAAGTGACAAGGAACAGTCATGTTACAAACATTATACTTCCATGCCCATGAAGGTTCTAGCAGGAGGCGGGGCCATGACCACACCAGTGAGAGGAACCAATTAAGTCCGGACTTGCAAAAGAGATGTATTGGCTGTTTAGATGTGCAAGGAGTTGACTCAGCCTAGTAGAAGGGTATAAATATATGTGCTTGTGTAAACACATCTTTTGCCTTTGCAGCTGTTTCACCCAGTGGGGGAataacttggtttgagcttttccTAGTCGTCCGTTTGAGTTTTTACTCTTTGTTCAGAACCTAacaatacccataacatgatgcagccactatgCTTGCAAATATAGAGAGAGTGATACTCTGTAATGTGTTGAATTggatttcccccaaacataacacattgtattcaggacaaaaagtgaattgttttGCATAattttttacagtattactttagtgccgtgttgcaaacagaatgcctGTTTTGGAGAAGAAAATacaattctgtacaggcttccttcttttcgctCTAATtacgttagtattgtggagtaactacaatgttgttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561879 True 2164 lncRNA 0.37 3 29693030 29695738

Neighbor

gene id symbol gene type direction distance location
LOC110525693 NA coding downstream 39254 29650203 ~ 29654088 (-)
LOC110526522 LOC106585290 coding downstream 96221 29595416 ~ 29596809 (-)
LOC110525685 LOC106585294 coding downstream 117432 29526783 ~ 29575598 (-)
LOC110525684 LOC106585295 coding downstream 172050 29502192 ~ 29520980 (-)
LOC110525683 NA coding downstream 277688 29414761 ~ 29415342 (-)
LOC110525694 LOC106585282 coding upstream 10321 29706059 ~ 29754403 (-)
LOC110525696 LOC106585281 coding upstream 59164 29754902 ~ 29760372 (-)
LOC110525697 rsrc2 coding upstream 74186 29769924 ~ 29786928 (-)
LOC118965073 NA coding upstream 102771 29798141 ~ 29811783 (-)
kmt5ab kmt5a coding upstream 167460 29863198 ~ 29870407 (-)
G494546 NA non-coding downstream 12344 29680082 ~ 29680686 (-)
G494544 NA non-coding downstream 14913 29677502 ~ 29678117 (-)
G494540 LOC106585286 non-coding downstream 18805 29673676 ~ 29674225 (-)
G494537 NA non-coding downstream 25493 29667282 ~ 29667537 (-)
G494530 NA non-coding downstream 34406 29658349 ~ 29658624 (-)
G494621 NA non-coding upstream 147045 29842783 ~ 29848905 (-)
G494624 NA non-coding upstream 154591 29850329 ~ 29850535 (-)
G494645 NA non-coding upstream 204972 29900710 ~ 29925721 (-)
G494691 NA non-coding upstream 249122 29944860 ~ 29945081 (-)
G494542 NA other downstream 17457 29675323 ~ 29675573 (-)
LOC110525681 hectd4 other downstream 209684 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 277716 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 1857728 27827231 ~ 27885634 (-)
LOC110525714 LOC106585251 other upstream 830948 30526034 ~ 30527686 (-)
G495554 NA other upstream 849664 30545402 ~ 30549450 (-)
G495560 NA other upstream 879380 30575118 ~ 30575573 (-)
G496772 NA other upstream 1965655 31661393 ~ 31661618 (-)
G496777 NA other upstream 1975240 31670978 ~ 31671927 (-)

Expression


Co-expression Network