G494621


Basic Information

Item Value
gene id G494621
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29842783 ~ 29848905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU561948
ctagtaatagATTTTAATATATAAAACATGTTTAATACAGAGGAAAGAACAGGAAAGCAAGCATTTTATGCTCCCAGAAGCAAAAGAAGGGTTCAACATACTGTACATCCTGTTTAGACCCCTTGTGCCGTCACCCTCTCACATATTCCATCCCTTTTCAGCCTGGGAAAGTAGCAAAAAAGTCCCTTTAAAAAAGGTAGATTTGTTCATTGTCAAGTACAGAGATTTCCTTTGTGTGCCAACATTTTTAACCAATGTCCTGTAACTACATAGCCAGTTTTACATACCCAGTGTTAGAGACATTCAGTGTCTAGGGTGCACATAAGAGATGCAAAGAATACATTTGTGATGTGCAGATTAAATCCCTATTGAGTAAATTTCCTATTGTATATAAAAATACATAATTGTACTTATGTCCATGTGTATAGTTACTGATCGAGCGGTTCTTTGATCTGCGGGTAATGGGTCAAATCCAGAATCAAATGCAGTAACCTAAACAGCGTTGGGAGATCTCTCTAAACACCTCACTCCCTGGTCTTACTGAAGATCATGCATGTAGTGATATGGAAAGGGGTGAGGACGAGACTACAGTCCCAATTACATATAAGGTCAAGCAAAGGAAGTAGCGGGAATAACACCCTGGAACTTATGCAGAGACATTGAATAGGGACTGTGTAAAAATGTGCTTTCCCGCATGATCTGTGTGCCAatgtctccctccttcccccacacagcaaccaacatagaaaaataacaaacaaaaaaatacagtgacGCACTCCAGAAAAAGGCTACCAAACAATGTGCACCAAGAGGCTGTCCCAGATACGGCCTAATTCAATACTCTGTCATTTTATGATGTTAAAGTGATCCTGTCCATACTAATACAATTATATGCACAACGGTCTTTTAAAAGTAGCTTGAAGTAAAAAGCTCAGAAACACAAAATTACATTGTTCCATTACAAACGATTTGCATAATTCCATAAAACATTTTCCCTTTCAGTTCTTGATACATTTATGGTCCACAAAAACAAAGAATACCGCCTCGGTGGCACATTGTGGTTTATCTATAAAAGAATAGAGCGTATCTCTTTCACAGGCAGAAAGCACCGAGAGATAAAACCAGGCTGAAGAAGAGGGGAGCACAAGTTCCAGTTTGGCAAAAGAAATaggcagagaggacagaggattgTCCGGTTGGAGGCAGCTCAAAAGGACCCTGTGTCCACGTCATAAGATGGCTGTGTCTCAGATCAACCCAACCATCCACTATGAAGATGTCCTTCTCTAGCTTGTAGCTGTCTACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561948 True 1310 lncRNA 0.40 2 29842783 29848905

Neighbor

gene id symbol gene type direction distance location
LOC118965073 NA coding downstream 31000 29798141 ~ 29811783 (-)
LOC110525697 rsrc2 coding downstream 55855 29769924 ~ 29786928 (-)
LOC110525696 LOC106585281 coding downstream 82411 29754902 ~ 29760372 (-)
LOC110525694 LOC106585282 coding downstream 88380 29706059 ~ 29754403 (-)
LOC110525693 NA coding downstream 189007 29650203 ~ 29654088 (-)
kmt5ab kmt5a coding upstream 14293 29863198 ~ 29870407 (-)
LOC118964857 NA coding upstream 121162 29970067 ~ 29974882 (-)
LOC110525703 LOC106585270 coding upstream 127253 29976158 ~ 29980778 (-)
LOC110525706 NA coding upstream 256460 30102891 ~ 30141156 (-)
LOC110525709 LOC106585264 coding upstream 340667 30189572 ~ 30191815 (-)
G494556 NA non-coding downstream 147045 29693030 ~ 29695738 (-)
G494546 NA non-coding downstream 162097 29680082 ~ 29680686 (-)
G494544 NA non-coding downstream 164666 29677502 ~ 29678117 (-)
G494540 LOC106585286 non-coding downstream 168558 29673676 ~ 29674225 (-)
G494624 NA non-coding upstream 1424 29850329 ~ 29850535 (-)
G494645 NA non-coding upstream 51805 29900710 ~ 29925721 (-)
G494691 NA non-coding upstream 95955 29944860 ~ 29945081 (-)
G494692 NA non-coding upstream 96750 29945655 ~ 29945863 (-)
G494693 NA non-coding upstream 97257 29946162 ~ 29946429 (-)
G494542 NA other downstream 167210 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 339392 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 359437 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 427469 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2007481 27827231 ~ 27885634 (-)
LOC110525714 LOC106585251 other upstream 677781 30526034 ~ 30527686 (-)
G495554 NA other upstream 696497 30545402 ~ 30549450 (-)
G495560 NA other upstream 726213 30575118 ~ 30575573 (-)
G496772 NA other upstream 1812488 31661393 ~ 31661618 (-)
G496777 NA other upstream 1822073 31670978 ~ 31671927 (-)

Expression


Co-expression Network