G494679


Basic Information

Item Value
gene id G494679
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29956552 ~ 29958204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU562011
GTGCAATCCATCAcaggtgttataatgtgttggcGCTAGCTAGCAGGTAACTATGTGGTTATTCCGTGAATGCAGGCACAACTGGGTCCCTACAGAGCCGCTCGGGATCCGGTGCACTGAGTGATGTGTGCAGTCTGAGTAAGGACGGTTagaatgagcgagagagaaaagatTGAGAGGAGATTGAAGGAGTGCGGTGGAGTAGGAAGAGGAagatagaacaggacagaaaaGAAAAGAGGGGGTCGAActaaggagagagaagagattgaCTGAAAGAGGAGTTGAGAGAGAGATACTTGTGGTAACGAGAACACTTACTGTTGGCTATGTTGGTGGCAGTGTAACTGTCTGCCATTCCTGAAACCTGGCTGGCAATGCTGACCTCACTGGCCCTGCGCAGGCCCCGGCAGTGGGGGCCCGTAACAGGGGAGGAGGGGTACGAACTGTCCATGAAGACACCACCATGAGACTGAACAACATCCGCTATTGAGTCGAAACAAGGAGATCCCATTAGACATAGACAAGACAAGAGGAGGATGAACAGCGAGGGAACAGGATGAGGAGGGGGTTGCAACCAAGAAATGTGATGGACCACACCATGGTTTCAGAAACCAGCAGGTGCCAACATCAGATTTCTTGGACAATCAGTGAGTGATCAGATAGTGGACTGATTAATACAACAGCATGTTAAAAGTGAGATGTTACTCCATTGGTTGTCACAGCACTATGCCTCAAAGTTTTTAATATCTGTCAAATGATTAGCTGGATTATTATTACCATGTATAACTAAAGTGGTAACAGTCTCATTTAGTATGTGAAGCTAATCAACATGTTGTTGTAACAAAAAAGTCAGGAGATACTATATTCACCACCATCACAAGCAGAAAAACACAAGGACACACAATTACAATGCAAGGGGCAGGGTTCCATGATTCAAGCCGACATCTGAGCAACACAGTCCGTTTAGCTTCCAAGCCTCAGATTTGGCAAAATCTACCAGAAGACAGTTATGGTTTATATGGAGACCTTTGCCTACCACCTTAAAACACAATCCCCAACTCTTGTATATGATGCTGAGGAGATGCTGCGGCAGCAAAGAAACCACATCACAACAACGAGTGCAGGAAGTGGCACGCTATTTTCATACCATTACAAAGGACATAAATCATTTATGGCATTAGCGAAACACAGCAAAACAAGGACAGACTCTTCCAGGTCAAGGTTTCATTCACTGTGGTACCCATTGCAGTCTCTGTAAATCATAAAAATGTTTAGAGATTCTGAGGGCCATGCTAATGAGCTATAATAAAGGCAATGGACTGAATCCTGCAGAACGAGGGCTCATATAGGACATGATTGACCTGGAACAGCCAGTAATGTGACCCCAACTCTTGAGTGGGGTAACATTCCCAAAGCATTCTAATACACCAGTATTGGTAAGGGTGtgaaaacatacacacagacaaagTCAGTGTGGAAAGAGGGTGCAACTAACACAAAAAGACATGTAcgacacagagtgagagacatCGGGGGATGCAAGTGAAGAGGAGAGGCTACACACACTCTAGAACAGCAGGTGTGGCCTTGAGGGAGCCCTCCTGCCAGTTTAGCACGGGCACAGGGATGCAGGTCTCGCTGATAGGTTCC

Function

NR:

description
PREDICTED: membrane-associated phosphatidylinositol transfer protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562011 True 1653 lncRNA 0.46 1 29956552 29958204

Neighbor

gene id symbol gene type direction distance location
kmt5ab kmt5a coding downstream 86145 29863198 ~ 29870407 (-)
LOC118965073 NA coding downstream 144769 29798141 ~ 29811783 (-)
LOC110525697 rsrc2 coding downstream 169624 29769924 ~ 29786928 (-)
LOC110525696 LOC106585281 coding downstream 196180 29754902 ~ 29760372 (-)
LOC110525694 LOC106585282 coding downstream 202149 29706059 ~ 29754403 (-)
LOC118964857 NA coding upstream 11863 29970067 ~ 29974882 (-)
LOC110525703 LOC106585270 coding upstream 17954 29976158 ~ 29980778 (-)
LOC110525706 NA coding upstream 147161 30102891 ~ 30141156 (-)
LOC110525709 LOC106585264 coding upstream 231368 30189572 ~ 30191815 (-)
sftpbb LOC106585263 coding upstream 241390 30199594 ~ 30209590 (-)
G494699 NA non-coding downstream 3163 29953181 ~ 29953389 (-)
G494698 NA non-coding downstream 3776 29952550 ~ 29952776 (-)
G494697 LOC106585272 non-coding downstream 5061 29951258 ~ 29951491 (-)
G494694 NA non-coding downstream 8308 29947971 ~ 29948244 (-)
G494693 NA non-coding downstream 10123 29946162 ~ 29946429 (-)
G494700 LOC106585272 non-coding upstream 777 29958981 ~ 29959276 (-)
G494701 NA non-coding upstream 1409 29959613 ~ 29959821 (-)
G494702 NA non-coding upstream 1940 29960144 ~ 29960726 (-)
G494703 NA non-coding upstream 2779 29960983 ~ 29961361 (-)
G494672 LOC106585272 non-coding upstream 4587 29962791 ~ 29968300 (-)
G494542 NA other downstream 280979 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 453161 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 473206 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 541238 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2121250 27827231 ~ 27885634 (-)
LOC110525714 LOC106585251 other upstream 568482 30526034 ~ 30527686 (-)
G495554 NA other upstream 587198 30545402 ~ 30549450 (-)
G495560 NA other upstream 616914 30575118 ~ 30575573 (-)
G496772 NA other upstream 1703189 31661393 ~ 31661618 (-)
G496777 NA other upstream 1712774 31670978 ~ 31671927 (-)

Expression


Co-expression Network