G494671


Basic Information

Item Value
gene id G494671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29974486 ~ 29980710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU562003
GAGCCCTCTCAAACTTCCTTACAGGCGGTGCTCTTTCAGACCGGGTTTACTTCCTCCAGGCTCCCTCGCTTCTCTCTTCCTTAACTCATTGTTGGATTACTTTTCTAGATCAGTAAACATGgcaacaaatggaccaaagataaccctgaaggagctgaaaAACtctacagcggagattggagtatcagTCCACTtaaagccgtacactccacacagctgggctttacggaagagtggccagcgaaaagccattgcttgaagaaaaaaaatgagcaaacacgtttggtgtttgccaaaaggcatgtgggagactccctaaagatatggaagaaggtactctggtcagatgatacTAAAATTGTGCTTTTTGGTCATCAAGGAAAATGGTATGTCTGGCGCAAAACCAACACCTCACAtaaccccgagaacaccatccccacagtgaagcatggtggtggcagcatcatgctgtggggatgatttcattggcagggactgggaaactggtcagaattgaaagaatgatggatggcactaaatacagggaagttcgagggaaacctgtttgtcttccagagatttgagactgggacggaggttcaccttccagcaggacaatgacccgaagcatactgctaaagcaacactcgagtggtttaaggtgaaacatttaaatgtcttggaatggcctagtcaaagcccagacctcaatccaattgagaatctgtggtatgacttaaaaattgctgtacaccagtggaacccatccaacttgaagttttgccttgaagaatgggcaaaaatcccagtggctagatgtgccaagcttatagagacatatcctaagaaacttgcagctgtaattgctgcaaatggtggctctacaaagtattgactttggagggagggggtgaatagttatgcactctcaagttctgttttttttcccAAAGTGGTacgcatgttgtgtaaatcaaatgatacaaaccacccccccccaaaaaaattattccaggttgtaaggcaacgaaaataggaaaaatgccaaggggtaaatactttcgcaagccactattattttttttaatgtacttTCTATGAGACCTTTTGGTTTTAGGTGAATTTGAACTACCTGTTTATTTATTTCTCTGCGTTCATTTGTTAAAAGCATTAAAGTGCAAGAGAGACCGGCAAGAAATAGACTAATGTCTATCTCCACAATATCCTTTAGATCACACAAGCACTGTGAGTTAAGAGGATTAAGGGCTAGAGTTATGAAATGTCAGGAAAAAACGAGTgttaaacacaccacaccataagCTTTACATTTACAGTG

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562003 True 1336 lncRNA 0.43 2 29974486 29980710

Neighbor

gene id symbol gene type direction distance location
kmt5ab kmt5a coding downstream 104079 29863198 ~ 29870407 (-)
LOC118965073 NA coding downstream 162703 29798141 ~ 29811783 (-)
LOC110525697 rsrc2 coding downstream 187558 29769924 ~ 29786928 (-)
LOC110525696 LOC106585281 coding downstream 214114 29754902 ~ 29760372 (-)
LOC110525694 LOC106585282 coding downstream 220083 29706059 ~ 29754403 (-)
LOC110525706 NA coding upstream 124655 30102891 ~ 30141156 (-)
LOC110525709 LOC106585264 coding upstream 208862 30189572 ~ 30191815 (-)
sftpbb LOC106585263 coding upstream 218884 30199594 ~ 30209590 (-)
LOC118965020 NA coding upstream 330350 30311060 ~ 30324946 (-)
LOC110525714 LOC106585251 coding upstream 545324 30526034 ~ 30527686 (-)
G494672 LOC106585272 non-coding downstream 6186 29962791 ~ 29968300 (-)
G494703 NA non-coding downstream 13125 29960983 ~ 29961361 (-)
G494702 NA non-coding downstream 13760 29960144 ~ 29960726 (-)
G494701 NA non-coding downstream 14665 29959613 ~ 29959821 (-)
G494700 LOC106585272 non-coding downstream 15210 29958981 ~ 29959276 (-)
G494712 NA non-coding upstream 11177 29991887 ~ 29992155 (-)
G494787 NA non-coding upstream 183314 30164024 ~ 30164528 (-)
G494785 NA non-coding upstream 193120 30173830 ~ 30179693 (-)
G494821 NA non-coding upstream 204594 30185304 ~ 30185520 (-)
G494542 NA other downstream 298913 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 471095 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 491140 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 559172 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 2139184 27827231 ~ 27885634 (-)
G495554 NA other upstream 564692 30545402 ~ 30549450 (-)
G495560 NA other upstream 594408 30575118 ~ 30575573 (-)
G496772 NA other upstream 1680683 31661393 ~ 31661618 (-)
G496777 NA other upstream 1690268 31670978 ~ 31671927 (-)

Expression


Co-expression Network