G495215


Basic Information

Item Value
gene id G495215
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30831347 ~ 30835282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU562633
ttaaaaaacacaaaacaattaTTTATTATACCAAGCATCTACAAGATTTTTTTGCACAATAACACATTAGCAAGCAATTTGAAATAGGCCCCTTAATGGAAAATACATATGACGTTACACACAAAACAAGAAACTGCtattgatatatgcGCTCACTACTGAAAGTCGCTGTGGATAAgaccgtctgctaaattactaaaatgtcaaatctAAAGAATGAAATAGTGGTACAAAGTCACGCCAAAAAATGTATTCAAGTTCCATCAACAAGTCCTCTACTCCTACTGTGTGCTTAGGACTGAAGTTGCTGTAGGAGAAAGGGTTTCTTAGAGACGACATTGCTTTAGCTTGTGGCTTTAAAATAAATGTGAGGTGTCTTACTACTGACAGTTTATGCACGAGCTGCAGCTTGGGGTTCGAAAGAAATGCAGGAATTTGATCACAAATCAGAACTTTGTAGAATATACTTTGCTATAAGGATATGAGTTTTGTATTTCGGCACCGTTGTTGAGAAAATACTGTCTAAAAATGTAGAAAGTGCAGAAAAGGGCAGCACAGAACTGATTTGATGTGCAACAACATACATCTCAACTAGAAtgttaataaaataaatacaattacatCCCTTGTGTGTTTGATTTAAATGGGGGGATATCAgacaccaagacacacacacggatatgCTTGACTTTTCATAACATGTCAACTGACACCTCAATGGGAACGGCGTGTAATTCTTCgtctttatagtgcacttcaTAACAAGGACTAAAACAATATTATAGAACCAAAAGGAATATAAAGGGAAGAGgtttgtttgtgtacatgtgtgtctTGTAGTCTGTAcatgttaaatatatttaaataagtAAACCTCTGAGATTCCCGACATTGTTAAAGTCCAAACAAATTCTCAGAGCCAGTCTCTTTTCTTTCACACTTGATTTCTCCTTTAATTGACCCTCATTTTTACTATACTGCAATGACCCTTATAGTCCAGAATTGTTTCAGTTGAATGAGCACCATTAAACATTTCAAGGAAAACTCCCCGCAAAAATTATCATACGATGCTTAAATGCATCATacagggatgatttctgtattttgaaagttacatatcttgaaaactttattgctgacaagcaaaacatttgggactatgtcaacaatgcacaaatgaaacaaataccaaaatatagttttggggtGGTATTTTCCTTCAATATTGGGTTTCCTTTTATCTTTGCATGTTTTCCGAGGCTGAAATATTTCCTAGCTGTAGACACAGGGACGGGACACAGGGGGAGCCATGGGTCTATGGGGAGGTGTGTGTTGGGGTAGAGGGGGGTGGTACTGGTTCCCAATGGAGGTGGGAAGACTCCGGAGCACCAGCGGGGCTTCCCTGAGGTGTCCCCCACCTTTCATCTGATGGTACAGCCGACAGAGGGTATCAGATAAGGTCTGGATCAGTAGAGTGCCAGAGAGACCTAAGGGAGGGGTGGTTAGACCCCGTGATCCTCAGAGATGCAGGAGGGATGCTACTTCCCCTGAACCTTGGTgtctgaggacagaggaggggagaCAAGCCAATAGGGTAGGGCGCCTGCCCGCTTATTCCTGTAGAAACCGCCTTGGGACGCAGTGCCGAACGAACCATCTCCAGACCCTAGATCAGGCTCT
>TU562638
ATTTTTTTGCACAATAACACATTAGCAAGCAATTTGAAATAGGCCCCTTAATGGAAAATACATATGACGTTACACACAAAACAAGAAACTGCtattgatatatgcGCTCACTACTGAAAGTCGCTGTGGATAAgaccgtctgctaaattactaaaatgtcaaatctAAAGAATGAAATAGTGGTACAAAGTCACGCCAAAAACAAGTCCTCTACTCCTACTGTGTGCTTAGGACTGAAGTTGCTGTAGGAGAAAGGGTTTCTTAGAGACGACATTGCTTTAGCTTGTGGCTTTAAAATAAATGTGAGGTGTCTTACTACTGACAGTTTATGCACGAGCTGCAGCTTGGGGTTCGAAAGAAATGCAGGAATTTGATCACAAATCAGAACTTTGTAGAATATACTTTGCTATAAGGATATGAGTTTTGTATTTCGGCACCGTTGTTGAGAAAATACTGTCTAAAAATGTAGAAAGTGCAGAAAAGGGCAGCACAGAACTGATTTGATGTGCAACAACATACATCTCAACTAGAAtgttaataaaataaatacaattacatCCCTTGTGTGTTTGATTTAAATGGGGGGATATCAgacaccaagacacacacacggatatgCTTGACTTTTCATAACATGTCAACTGACACCTCAATGGGAACGGCGTGTAATTCTTCgtctttatagtgcacttcaTAACAAGGACTAAAACAATATTATAGAACCAAAAGGAATATAAAGGGAAGAGgtttgtttgtgtacatgtgtgtctTGTAGTCTGTAcatgttaaatatatttaaataagtAAACCTCTGAGATTCCCGACATTGTTAAAGTCCAAACAAATTCTCAGAGCCAGTCTCTTTTCTTTCACACTTGATTTCTCCTTTAATTGACCCTCATTTTTACTATACTGCAATGACCCTTATAGTCCAGAATTGTTTCAGTTGAATGAGCACCATTAAACATTTCAAGGAAAACTCCCCGCAAAAATTATCATACGATGCTTAAATGCATCATacagggatgatttctgtattttgaaagttacatatcttgaaaactttattgctgacaagcaaaacatttgggactatgtcaacaatgcacaaatgaaacaaataccaaaatatagttttggggtGGTATTTTCCTTCAATATTGGGTTTCCTTTTATCTTTGCATGTTTTCCGAGGCTGAAATATTTCCTAGCTGTAGACACAGGGACGGGACACAGGGGGAGCCATGGGTCTATGGGGAGGTGTGTGTTGGGGTAGAGGGGGGTGGTACTGGTTCCCAATGGAGGTGGGAAGACTCCGGAGCACCAGCGGGGCTTCCCTGAGGTGTCCCCCACCTTTCATCTGATGGTACAGCCGACAGAGGGTATCAGATAAGGTCTGGATCAGTAGAGTGCCAGAGAGACCTAAGGGAGGGGTGGTTAGACCCCGTGATCCTCAGAGATGCAGGAGGGATGCTACTTCCCCTGAACCTTGGTgtctgaggacagaggaggggagaCAAGCCAATAGGGTAGGGCGCCTGCCCGCTTATTCCTGTAGAAACCGCCTTGGGACGCAGTGCCGAACGAACCATCTCCAGACCCTAGATCAGGCTCTGTTGAAGAAACAATGAGTTGGGGCCATGCTACCCTATGCATACATATATGAGACATACATATCAAATACTTAGTTAATAGAGCACATTATTAAATATCATAAAGCATTTATATGATGTTGCCATAGGCTGATGAGATATCCATCATTATCATGTGTCTAGAGATGAAAGTCATTTGAGTTACATGCATTTATTTAGTGAAGAAATCAACATTTACTGGTAGATGTCTACTAATGTGAGTCCGCATAGAGCAACAACTTTTAAAGCAAAAAAAGACATCAAATAGTATTATAAGTATGTTCCCTGCATGCCAAATGCAGTAGATAGTGTAATCTAGCCTGAATGAGGGGTGAGGATGGTTACCAGCGTTACCTGGCCAGATGATAGCCTCCAGCAGTGTCACCCTGCGAGCCAGAAGCTCCAGGTCTGCCTGCAAGTCTTGGAACATCTTCAAACTAATGTCCTATCGGAGAACAGTGACAAGGGGACTGGGTGAGGGGTGGAGAGTGGACACACCAGGCCTGGTCCTGGGGCTGTTCTACCTCTGTCCATACCCCATGTCCCACGTCCCACGTCCCAcgagtggtggagggtggggtgAGATCCAGCCTCATCTGACCCCTGCCTAAAGCTGACCCTGCTGCCTCAAGCTGACCCTGCTGCCTCAAGCTGACCCTGCTGCCTCAAGCTGACCACGCCTCCTACTCACCATGAATACCGATCATAGTCTCGAGGATTAAAACCCTCTCGGCTAAGATCTTCAGCGCTTCTCTGATCTGATGTATCCCGTCCCCCTGTGAAGATAGATACAGCCGTCAAGGTAAGGAGCACAAGCCAAACAAATTGCCCGCCAAGGTGCAAGTCATTTTCTCTCTGTCAATCCATTACAGCAGTTAGCAGGTTAAAACCAGTCCACGCACCCAGCCCGCATCCCTttatctcatccctccatctccctcgtTCTCTGGCCATGCTGCCATACCAGGCCAGTCTTTGCCATGCTGGGTAAAAACAGCATGCACATCACAACATATTCCTATGTTGTTGACATAACAAAAGTGGAGTAGACTGTCCAAGGCTTCAGGTTTGACCATGCCATCCACATTCCCTCTGGACTTGATCAAGATGAGCAGCTATTCAACCAGGCAAGTATTTTAGAGGGGTTGCATGACAAAAAAAGTGATTTTCTAAAAACATTTGTAAAGTCTTAGTCTGAAGTCTCAGTATATTGTATCTACATGACTGTTAATACAGCTGTGGTCATAATAGCTGCCAATCCATCTCTCACTGTGTTAAAATATGCTCACCAGATAAAGCCAGTAAGTCTTTAGTCTTTTTTAAAGTTTCTGTTTAAAATGAGAAACAGATCAATATCTACTTTTCAAGAAAGACCTACTGGCTTTATGAATAATCCCCTAAGAAAAAATATGAAACATAGCAAATAAAAACACAAAGATAACACAGACAAGCAATCATGTCAGTGACAGTTGATAAAGAACGCATGCACACGATTGTGTTAACGTGGATGCCTGAGTACTTTTCTCTTGGGTAAAGAAATAAACTGATTAACGAGTAGCGGACAAATCTCTACGGAACAAAAGGCAAGATTTCCTtaagctacagtactgtataaaTCATAACAATGTCTAATGTCCAGTGTACTTGTGTTTTTCCAGGTTGTATGGCTCCACAATAACAAGCTCCTCTATGTCATGGTTGATTGATGAGGAGCAGATGGGAGCAGAACAGATAATGGGGCTGTAGTGAGGCCGTCGAGGAGATAAGAAATATATTTTGGGTTTGCGATACATTTTAGAGTAATCTTGCCTGGTTCCTGTGTTATTGCTACATTTTTTTGTTATTACACTAAGTTAAACACAGAGTTTACATATGAGTTTGGCAAGCAAAAAGAGAAATGGCAAACAGTGCAGTAAATAAGGATGGGAGCATGCAGCCATGCATTGTGGGACACTGGAGGATAGCTGTATCCACTCACATTTCCAACCCCAATCCAAACACCCTACCCCACACACCCAGCACTAACCCATCACCACTGTTCCCACAACTCTAAATGGAGTGATTTGGCATATACATTCGACACATGCTTAAGCAaaaaggcccgagggggtgtggtatatggccaatataccccggctaa
>TU562644
ATTTTTTTGCACAATAACACATTAGCAAGCAATTTGAAATAGGCCCCTTAATGGAAAATACATATGACGTTACACACAAAACAAGAAACTGCtattgatatatgcGCTCACTACTGAAAGTCGCTGTGGATAAgaccgtctgctaaattactaaaatgtcaaatctAAAGAATGAAATAGTGGTACAAAGTCACGCCAAAAAATGTATTCAAGTTCCATCAACAAGTCCTCTACTCCTACTGTGTGCTTAGGACTGAAGTTGCTGTAGGAGAAAGGGTTTCTTAGAGACGACATTGCTTTAGCTTGTGGCTTTAAAATAAATGTGAGGTGTCTTACTACTGACAGTTTATGCACGAGCTGCAGCTTGGGGTTCGAAAGAAATGCAGGAATTTGATCACAAATCAGAACTTTGTAGAATATACTTTGCTATAAGGATATGAGTTTTGTATTTCGGCACCGTTGTTGAGAAAATACTGTCTAAAAATGTAGAAAGTGCAGAAAAGGGCAGCACAGAACTGATTTGATGTGCAACAACATACATCTCAACTAGAAtgttaataaaataaatacaattacatCCCTTGTGTGTTTGATTTAAATGGGGGGATATCAgacaccaagacacacacacggatatgCTTGACTTTTCATAACATGTCAACTGACACCTCAATGGGAACGGCGTGTAATTCTTCgtctttatagtgcacttcaTAACAAGGACTAAAACAATATTATAGAACCAAAAGGAATATAAAGGGAAGAGgtttgtttgtgtacatgtgtgtctTGTAGTCTGTAcatgttaaatatatttaaataagtAAACCTCTGAGATTCCCGACATTGTTAAAGTCCAAACAAATTCTCAGAGCCAGTCTCTTTTCTTTCACACTTGATTTCTCCTTTAATTGACCCTCATTTTTACTATACTGCAATGACCCTTATAGTCCAGAATTGTTTCAGTTGAATGAGCACCATTAAACATTTCAAGGAAAACTCCCCGCAAAAATTATCATACGATGCTTAAATGCATCATacagggatgatttctgtattttgaaagttacatatcttgaaaactttattgctgacaagcaaaacatttgggactatgtcaacaatgcacaaatgaaacaaataccaaaatatagttttggggtGGTATTTTCCTTCAATATTGGGTTTCCTTTTATCTTTGCATGTTTTCCGAGGCTGAAATATTTCCTAGCTGTAGACACAGGGACGGGACACAGGGGGAGCCATGGGTCTATGGGGAGGTGTGTGTTGGGGTAGAGGGGGGTGGTACTGGTTCCCAATGGAGGTGGGAAGACTCCGGAGCACCAGCGGGGCTTCCCTGAGGTGTCCCCCACCTTTCATCTGATGGTACAGCCGACAGAGGGTATCAGATAAGGTCTGGATCAGTAGAGTGCCAGAGAGACCTAAGGGAGGGGTGGTTAGACCCCGTGATCCTCAGAGATGCAGGAGGGATGCTACTTCCCCTGAACCTTGGTgtctgaggacagaggaggggagaCAAGCCAATAGGGTAGGGCGCCTGCCCGCTTATTCCTGTAGAAACCGCCTTGGGACGCAGTGCCGAACGAACCATCTCCAGACCCTAGATCAGGCTCT
>TU562646
ATTTTTTTGCACAATAACACATTAGCAAGCAATTTGAAATAGGCCCCTTAATGGAAAATACATATGACGTTACACACAAAACAAGAAACTGCtattgatatatgcGCTCACTACTGAAAGTCGCTGTGGATAAgaccgtctgctaaattactaaaatgtcaaatctAAAGAATGAAATAGTGGTACAAAGTCACGCCAAAAAATGTATTCAAGTTCCATCAACAAGTCCTCTACTCCTACTGTGTGCTTAGGACTGAAGTTGCTGTAGGAGAAAGGGTTTCTTAGAGACGACATTGCTTTAGCTTGTGGCTTTAAAATAAATGTGAGGTGTCTTACTACTGACAGTTTATGCACGAGCTGCAGCTTGGGGTTCGAAAGAAATGCAGGAATTTGATCACAAATCAGAACTTTGTAGAATATACTTTGCTATAAGGATATGAGTTTTGTATTTCGGCACCGTTGTTGAGAAAATACTGTCTAAAAATGTAGAAAGTGCAGAAAAGGGCAGCACAGAACTGATTTGATGTGCAACAACATACATCTCAACTAGAAtgttaataaaataaatacaattacatCCCTTGTGTGTTTGATTTAAATGGGGGGATATCAgacaccaagacacacacacggatatgCTTGACTTTTCATAACATGTCAACTGACACCTCAATGGGAACGGCGTGTAATTCTTCgtctttatagtgcacttcaTAACAAGGACTAAAACAATATTATAGAACCAAAAGGAATATAAAGGGAAGAGgtttgtttgtgtacatgtgtgtctTGTAGTCTGTAcatgttaaatatatttaaataagtAAACCTCTGAGATTCCCGACATTGTTAAAGTCCAAACAAATTCTCAGAGCCAGTCTCTTTTCTTTCACACTTGATTTCTCCTTTAATTGACCCTCATTTTTACTATACTGCAATGACCCTTATAGTCCAGAATTGTTTCAGTTGAATGAGCACCATTAAACATTTCAAGGAAAACTCCCCGCAAAAATTATCATACGATGCTTAAATGCATCATacagggatgatttctgtattttgaaagttacatatcttgaaaactttattgctgacaagcaaaacatttgggactatgtcaacaatgcacaaatgaaacaaataccaaaatatagttttggggtGGTATTTTCCTTCAATATTGGGTTTCCTTTTATCTTTGCATGTTTTCCGAGGCTGAAATATTTCCTAGCTGTAGACACAGGGACGGGACACAGGGGGAGCCATGGGTCTATGGGGAGGTGTGTGTTGGGGTAGAGGGGGGTGGTACTGGTTCCCAATGGAGGTGGGAAGACTCCGGAGCACCAGCGGGGCTTCCCTGAGGTGTCCCCCACCTTTCATCTGATGGTACAGCCGACAGAGGGTATCAGATAAGGTCTGGATCAGTAGAGTGCCAGAGAGACCTAAGGGAGGGGTGGTTAGACCCCGTGATCCTCAGAGATGCAGGAGGGATGCTACTTCCCCTGAACCTTGGTgtctgaggacagaggaggggagaCAAGCCAATAGGGTAGGGCGCCTGCCCGCTTATTCCTGTAGAAACCGCCTTGGGACGCAGTGCCGAACGAACCATCTCCAGACCCTAGATCAGGCTCTGTTGAAGAAACAATGAGTTGGGGCCATGCTACCCTATGCATACATATATGAGACATACATATCAAATACTTAGTTAA

Function

NR:

description
EMI domain-containing protein 1-like isoform X3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU562633 False 1680 lncRNA 0.41 2 30831347 30833126
TU562638 False 3771 lncRNA 0.42 3 30831392 30835282
TU562644 False 1635 lncRNA 0.41 2 30831392 30833126
TU562646 True 1712 lncRNA 0.41 2 30831392 30833203

Neighbor

gene id symbol gene type direction distance location
LOC110525716 LOC106585257 coding upstream 271551 30552561 ~ 30559796 (+)
4ebp2 LOC106585258 coding upstream 307965 30517976 ~ 30523383 (+)
LOC110525713 LOC106585259 coding upstream 325282 30428452 ~ 30506065 (+)
LOC110525712 LOC106585261 coding upstream 547825 30247899 ~ 30283522 (+)
LOC110526737 NA coding upstream 588932 30232592 ~ 30242415 (+)
si:ch211-225b11.4 LOC106584980 coding downstream 171265 31006547 ~ 31022524 (+)
LOC110525729 p3ip1 coding downstream 190499 31025781 ~ 31037928 (+)
LOC110525731 LOC106584982 coding downstream 263785 31099067 ~ 31150187 (+)
LOC110525733 LOC106584983 coding downstream 379794 31215076 ~ 31305586 (+)
LOC110525738 ficd coding downstream 571722 31407004 ~ 31428582 (+)
G495176 NA non-coding upstream 22538 30807925 ~ 30808809 (+)
G495174 NA non-coding upstream 28004 30802646 ~ 30803343 (+)
G495145 NA non-coding upstream 130256 30700831 ~ 30701091 (+)
G495108 NA non-coding upstream 134597 30694789 ~ 30696750 (+)
G495136 NA non-coding upstream 145194 30685862 ~ 30686153 (+)
G495216 NA non-coding downstream 2862 30838144 ~ 30840251 (+)
G495262 NA non-coding downstream 80662 30915944 ~ 30916945 (+)
G495271 dnah10 non-coding downstream 89996 30925278 ~ 30925519 (+)
G495276 NA non-coding downstream 95812 30931094 ~ 30931392 (+)
G495307 NA non-coding downstream 130966 30966248 ~ 30967437 (+)
G495132 NA other upstream 98457 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 254591 30576105 ~ 30576756 (+)
G494943 NA other upstream 394662 30435962 ~ 30436685 (+)
G494946 NA other upstream 486500 30322022 ~ 30344847 (+)
G495920 LOC106584987 other downstream 459664 31294946 ~ 31312737 (+)
polk polk other downstream 2092636 32926258 ~ 32936958 (+)
LOC110525799 LOC106585046 other downstream 2311185 33135282 ~ 33165186 (+)
c6h22orf39 cssa24h22orf39 other downstream 2482355 33317578 ~ 33320353 (+)

Expression


Co-expression Network