G495920 (LOC106584987)


Basic Information

Item Value
gene id G495920
gene name LOC106584987
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31294946 ~ 31312737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU563404
ggactttcagaccatgagaaacaagattctctgttctgatgaaaccaagattgaactatttggcctgaatgccaagcgtcacgtctggaggaaactttgcaccatccctacagtgaagcatggtggtggcagcatcatgctgtggggactgggagacaagtcaggattgagagaaagatgaacggagcaaagcacagaTAGATCCTttatgaaatcctgctccagagcgctcaagacctcagactggggtgaaggttaaccttccaacaggacaacgaccctaggcacacagccaagacaacgcagtagtgACTTCGGcgcaagtctctgaatatccttgagtagcacagccagagcccggacttaaacccaatcaaacatctctggagagacctgaaaatagttgtgcagcgatgctcccatGCTCCCCAAAAtgtattcaatccattttagaataagcctgtaacataacaacatgtggaaaaagtcaaggggtctgaatactttccaaatgcactgtattcacactgagtgcacaaaacattatgaacacctgctctttccatgacatagactgaccaggtgaatccagttgaaagctatgCTCCGTTATTAAAttaacttgttaaatccacttcaatcagtatagataaaaggttaaataaatatttttaagccttgagacaattaagacatagattgtgtgtgtgtgccagtcagagggtgaatgggcaggtcaaaatatttaagtgcatttgaacagggtatggtagtaggtgccaggtgcactggtttgtgtcaagaactgcaatgctgctgggtttttcacactcaacagtttcccatgtttatcaagactggtccaccacccaaaggacatccagccaacttgacacaactgtgggaagcattggagtcaacataggccagcgtccatgtggaatgctttcgacaccttctggagtccatgcccagacgaattgaggctgttctgatgtcaaatattaggaaggtgttcatatTGTTATGTACACCCAGTGTACACTTCAAAGTGTGTGAATAGTATTTCTGCTCTTCGTACTGTAAGCAGTGTGACGTTCATTTCCTTTTAGAAGGTAGCTtttttttcagcggtagggataTGTTTCAGCTTAATTTACACAAATTACCACAAAGAGGTCACAATGATTTCCCCACAAAAAACATTTCCCCTCAAGAGACATGGCTGTCAAACAGGAGCATTTCCTGTTTTCACTGATGTCGTTGAACTTTGAGCTTGGTCACTCACTGAAACAAATGGACTTCTGCTTGTAAGATTAACATCTACAGggacacacattatacacacattatacagagGTTATAATTATTAGGTTATTAGGTTGTTATTTCAATATGTCTAGTAAATAGGTTATAACCCTATGTTAGGTCACATCACTACAAAAGATCACTCCACAGCAAGGCCTCCATCGCATTCTGTATGTGAGATAATGACATTCAAATTGGTTGGAAAAAGTTACGGTAGGAAAATATACTGGAGCTCATGGGAGAAACATATCAAACAGATAGATGTTTTAACATGAGACAAAGGGCACTACTTGTGATTATACAAATATATGACAAATATAACTAGTCCATTAGATCATAAAGTGAAAATACACCTTACATGACATTTCTACAAGACAAAGCGTCTGCAGCCACTGAGGCCTTACCATCATCATAGAGATTTAGATGTGTGTGGAGGTTCTGCGGCTGCCCTCCATGGAGCTGGACCTGGAGAGGTAGCGGCTGGTGGTGCGGCCCTCCTCTCCGATGGCATTCGCCATCTTAGACAGTATGGAGCTCTTGAATTTCTGCAGGAAGTCATTGCCCATGAAAACATACAGCATTGGGTTGAGGAAACTGTTAGCTATGGCTACAGTAGTGCCCACCATAAGCCCAGCTCTTATAATCTCCAGGTCGTAGCTTTGGTGGTTCAGCTCAAGCAGTACAAAGACATGGTAAGGCAGCCAGCAGATGAAGAATGTGGCTATCAGGGCAGTCATAACTTTGAAGGGCTTGGAGGACTTGCTCATCATTCGGTTGGTTCTCAGTCGCAGGATGATGACAGAGTAACAAAAGATGATGATAAAGAATGGCAGCACAAACCCACCAATGAACCGACTCACTGCAATCATCTTGTGGCTGTGTTGGTCTCTGTAGTTATTGAAACACTTTCTCATCCCTAAATGGGTTTTGACGTCTCTGAACACTATGGAGGGGATGCTGAGGGCGACAGAGGCAACCCAGGCCAGAACCACCACTACAGAGGCCTTGCCCATGGTGCGGTGGTTCTGAGCCCACACTGGAAACATCACTGACACACAGCGGTCAACACTGATGATGACCAGGAGGAAGATGCTGCAGAACATGTTGAGGAACATCACAAAAGAGGTGAACTTGCACATGAAGAGCCCAAAGATCCAGTCTTTTGTCACCGTGTTGATGATGTTGAAGGGGAGACAGGCACAGAATATGAAGTCGGAGACGGCCAGGCTGAGGTACCAGGTGGTGTTGATTGTCTTCTTCATCTTGAGACCAGCGATCCAGATGACCACCCCATTCCCACAAACCCCCAGCAGGAAGATAACTACATTGACCACCAGGAGGGAGGCGCATGAAACTTCTGTGAAGCATGTCTTGTGAGTTTTGAAATCTAAATCCTCGGGAGGAGTAACATTGTCATAGGTGTAATTGCTATAATCA

Function

NR:

description
chemokine-like receptor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU563404 True 2745 TUCP 0.44 2 31294946 31312737

Neighbor

gene id symbol gene type direction distance location
LOC110525731 LOC106584982 coding upstream 144759 31099067 ~ 31150187 (+)
LOC110525729 p3ip1 coding upstream 257018 31025781 ~ 31037928 (+)
si:ch211-225b11.4 LOC106584980 coding upstream 272422 31006547 ~ 31022524 (+)
LOC110525716 LOC106585257 coding upstream 735150 30552561 ~ 30559796 (+)
4ebp2 LOC106585258 coding upstream 771564 30517976 ~ 30523383 (+)
LOC110525738 ficd coding downstream 94267 31407004 ~ 31428582 (+)
LOC110525744 LOC105025588 coding downstream 331966 31644703 ~ 31654452 (+)
LOC110525750 NA coding downstream 343601 31656338 ~ 31660186 (+)
LOC110526885 LOC106584996 coding downstream 347496 31660233 ~ 31671928 (+)
zgc:158398 LOC106585000 coding downstream 362601 31675338 ~ 31683982 (+)
G495942 NA non-coding upstream 35643 31252863 ~ 31259303 (+)
G495930 NA non-coding upstream 58589 31228552 ~ 31236357 (+)
G495929 NA non-coding upstream 58893 31228274 ~ 31236053 (+)
G495927 NA non-coding upstream 63804 31222963 ~ 31231142 (+)
G495911 NA non-coding upstream 83706 31210982 ~ 31211240 (+)
G495976 NA non-coding downstream 7707 31320444 ~ 31321010 (+)
G495978 NA non-coding downstream 9194 31321931 ~ 31322161 (+)
G495981 NA non-coding downstream 13597 31326334 ~ 31326753 (+)
G495995 NA non-coding downstream 25481 31338218 ~ 31342976 (+)
G496024 NA non-coding downstream 87943 31400680 ~ 31409129 (+)
G495132 NA other upstream 562056 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 718190 30576105 ~ 30576756 (+)
G494943 NA other upstream 858261 30435962 ~ 30436685 (+)
polk polk other downstream 1615181 32926258 ~ 32936958 (+)
LOC110525799 LOC106585046 other downstream 1833730 33135282 ~ 33165186 (+)
c6h22orf39 cssa24h22orf39 other downstream 2004900 33317578 ~ 33320353 (+)
LOC110525816 LOC106585060 other downstream 2148898 33447246 ~ 33465055 (+)
G499111 NA other downstream 2838403 34151140 ~ 34151737 (+)

Expression


Co-expression Network