G496590 (LOC106584983)


Basic Information

Item Value
gene id G496590
gene name LOC106584983
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31302885 ~ 31305419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU564186
caaaaaacactcaaagttAAAGTCCTATGTCAAAAATAGAAGAGATATCTCCCATTTACTTGTTGCATTATAAATATATTTGTAATTTTGTTGCACGTACTATAAAAAATATATGTGTATATTTTGGAAGGAATTTTTTCTTTCATTGCACTCTTTCTACATGTGACCAATAGAGACACGCACACATTATACATCAGTCAACATAAAATGGTGGGTGTACAAAATCAAATGCTTCACTTACAGATTATTTTGATGTATATTAGCTTTCTATTCTCTGTTGCACATTACCTATGGCTGGGACTATTATATACCTGTACATGTAGCTTGTTTTGCGATACCAAAGCAATCGAGAAAATGGGGTGCGTCACTTTCAGCATTACTACTCACCTTCAACAAAAATGATCAGGGATCGTATATCAAGAAAAAAAAGCATTGAGGGGAAAACTCTCATCTCATATCATCTATAACTTGAATAAATGCCTTTTGGGCCTTTTGTGTTTGAGTCATTATAGGCAGGCAAATTTGACTGCCCCCCCATACAAATGTATAATTTGAAGTGTTAAACTATCAGGGTATGCTTGATAACTCCACAATACTGATCTAACGTGCCTCAGCCACACAGTGAGGTGGCATACAATTATTGATTGTTAACCCTGCCTCTTCCCAGCCTGTATTAAGTTATGAGCCAAATGGAAATCTCAAACATTCGATCAGTGCATTGCACTGACACAATATTTGCAATAATTGCATAACAACATCCTTGGTATTTTGTTTCATAAGCTCGACACTAGTGTGTCTGATGATGCATTAAGCGGACAGTTTAACATCAAATATCATCAATAATGTATTCACATTACCAATAATATTTGATATTAGTAATCATTTTATTTTCCCTACATTTCAACTTAAAGCCAACAGTTAGCTGACAGAAAAGGCACCACATTGTAATTTTGCTTCAAACCACCATTATAAGGAAAGCAACAAGTTCTGCAGAGTGATTTAGCAGAAGTGGTAGTTTCAAAATAGCGCTGTTTGCAGAAAACTCCAttcaataaatccacaataaATGTATCATGCGCAGTGTGTCTGGCTGACCACATCTGAGGAGACCAAGGACGAACAAGCTGTCGATGAGTCGAGGCTAGTTATTGAAAGGGCTGTCTTGACAAGAGTCAGGAGTGTTCCATAGAGCCTGATGGTCAAAATAAACTATGTAGAGTTAATTATTTAGTgttccagagctgttgccagtaaccaaaaggacAGCTGTAATGCACAGATGTAATGACTCAGTAGGACTGATGCAGCACAGTTTTAAGAGAGGCCACTGCTTCAGAGAAGCAGAGCAGCTGTTTGATAGTGCTGTATTACCTCTTCTTGTTAGAATACTGCTGAAGTATGAGGAGAAGAGTGAAGATCTAGCCTCATGGTGTGTCCACAGGGGTAGACGGAGAGATGAGTGTTCAGTCCCATTCATTACCTCCTATAGATGGACACAGGGGTTTTCGCCAACCAAATCCAAGTCCAATAGTACGGTTTTGACCACCTCCTAATTTTAAATATAGTGGCTCTCAAACATACTGTATTCAGCAAGTTGAGGTATAGATTTTTCAtatctaacaaaacaaaacatttagttGAAAATGACAGATCATTAAAAGGTTTTGTGACATTTCAAACCATTTCATGAAAGAGTATTTGTTCTCCTAATCAATACGGTTGTGTGCCTGTCAGTCAAACAAATAAAGGAAAGGGATGTGAgaaagaaggagacagagaagtgGTGGGGAACAGAGAAGTATATTAAATAAAAACGTATTTCCTACACATAGATTTTCAGTTCATGTGACTTTTATATTTGAAGCCATTTGGACATGGATGGCATGAATTAATCCTAGAACGAAGGGAAGGGATAGAAGAACAGagtgagaaatggagagagagagagagggaaaggagaggagatatTATCTCAGAGTGGGTCGGTACTCCTTCGGCACCCCGGCCATGTTCCTCTTCTTTAGGGAAGCGTCCACAGTCATGACCAGTTCGTCAATGCTAGTGCGCATCTCAGGTGTGTACGGGTCATAATCCAGTTTACGCAGGCCGGAGCGCTTGAATTTACCGTCCTTCTGTCCCTCtacacagagtaggcgttcctcGGCCACCTCCAGGTCCAGAAACAGGACCATGTCCTTGAGCTTAGAGAACAGCTCCCTCTTCAGCTCCTCAAAGTGGACCACATGGACATTCCTCCCATAACGCAGCCAATCCAGTGTGTGGGACGCCCACCAAGGAGCATAGTTCTTCACAAACTCAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU564186 True 2321 lncRNA 0.40 2 31302885 31305419

Neighbor

gene id symbol gene type direction distance location
LOC110525730 LOC106584981 coding downstream 206995 31058538 ~ 31095890 (-)
LOC110525727 LOC106584979 coding downstream 302482 30966155 ~ 31000403 (-)
dnah10 dnah10 coding downstream 336810 30905997 ~ 30966075 (-)
LOC110525725 LOC106584977 coding downstream 397074 30831347 ~ 30905811 (-)
LOC110525724 LOC106584976 coding downstream 482266 30802629 ~ 30820619 (-)
LOC110525732 LOC106584984 coding upstream 188 31305607 ~ 31306398 (-)
LOC110525735 LOC106584987 coding upstream 5481 31310900 ~ 31315063 (-)
LOC110525734 LOC106584947 coding upstream 9795 31315214 ~ 31320162 (-)
LOC110525736 LOC106584988 coding upstream 123241 31428660 ~ 31445370 (-)
tmem119a LOC106584989 coding upstream 152623 31458042 ~ 31464600 (-)
G495908 NA non-coding downstream 92986 31209623 ~ 31209899 (-)
G495879 NA non-coding downstream 118180 31184438 ~ 31184705 (-)
G495831 NA non-coding downstream 178460 31108909 ~ 31124425 (-)
G495825 LOC106584982 non-coding downstream 203075 31099107 ~ 31099810 (-)
G495823 NA non-coding downstream 205870 31096788 ~ 31097015 (-)
G496595 NA non-coding upstream 16044 31321463 ~ 31321662 (-)
G496609 NA non-coding upstream 41500 31346919 ~ 31360911 (-)
G496614 NA non-coding upstream 49778 31355197 ~ 31355990 (-)
G496620 NA non-coding upstream 56608 31362027 ~ 31362255 (-)
G496623 NA non-coding upstream 61103 31366522 ~ 31366759 (-)
G495560 NA other downstream 727312 30575118 ~ 30575573 (-)
G495554 NA other downstream 753435 30545402 ~ 30549450 (-)
LOC110525714 LOC106585251 other downstream 775339 30526034 ~ 30527686 (-)
G494542 NA other downstream 1627312 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 1799494 29502192 ~ 29520980 (-)
G496772 NA other upstream 355974 31661393 ~ 31661618 (-)
G496777 NA other upstream 365559 31670978 ~ 31671927 (-)
G496851 NA other upstream 538044 31843463 ~ 31892649 (-)
LOC110525784 LOC106585031 other upstream 1374623 32680037 ~ 32682899 (-)
G498484 rpl6 other upstream 2022088 33327507 ~ 33330504 (-)

Expression


Co-expression Network