G496429


Basic Information

Item Value
gene id G496429
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32227087 ~ 32228124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU564002
tagaGATTAAGTActttactttggtgcgaaaagtgcaaatcaatcccagaaaaacagaaaaaggaccttgaagatgctggaggaaataggtataaaagtatctatatccacagtaaaatgagtcctatatcgacataacctgaaaggtcgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccaggttacggtttgcaactgcacatggggacaaagatcgtactttttggagaaatgtcctctggtctgatcaaacaaaaatataactgtttggcaataatgaccatcgttatgtttggagtaaaaagggggaggcttgtaagccaaagaacaccatcccaaccgtgaaacacggtgggaaatgatgtggatatattgaagcaacctctcaagacatcagtcaggaagcttggtcacaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggaaaaatggcttaaggacaacaaagtcaaggtatatgagtggccatcacaaagccctgacctcaatcctatagaacatttgtgggcagaactgaaaaatcttgtgagagcaaggagacctacaaacctgactcagttacaccagctctgtcaggaggaatggaccaaatttcacccaacttattgtaggaagtttgtggaaggctacccaaaacgtttgacccaagttcaacaatttaaaggcaatgctacaaaatactaattgagtgcatgtaaacctctgacccactgggaatgtggtgaaagaaataaaagctgaaataaatcattctctctactattattctgatatttcacaatcttaaaataaagtggtgagacagtgaatttttactaggattaactgtcaggaattgtggaaaaacttagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtatgtgtgtaaaCATGTTGTACACATATCTATGTTTTTCATTTTGCTGAATTTCTGAGTGTTGGTTTACTCAAAAAACAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU564002 True 1038 lncRNA 0.39 1 32227087 32228124

Neighbor

gene id symbol gene type direction distance location
erap2 LOC106585017 coding upstream 2255 32211361 ~ 32224832 (+)
rgmb LOC106585015 coding upstream 25723 32188430 ~ 32201364 (+)
LOC118965021 NA coding upstream 209708 32014529 ~ 32017379 (+)
LOC110525771 LOC106585012 coding upstream 214053 32003116 ~ 32013034 (+)
fancg fancg coding upstream 224428 31995567 ~ 32002659 (+)
lnpep LOC106585016 coding downstream 3964 32232088 ~ 32250568 (+)
cdk7 cdk7 coding downstream 175287 32403411 ~ 32409712 (+)
serinc5 LOC106585022 coding downstream 186261 32414385 ~ 32469172 (+)
mtx3 mtx3 coding downstream 257740 32485864 ~ 32507844 (+)
LOC110525781 LOC106585026 coding downstream 304641 32532765 ~ 32537679 (+)
G496460 NA non-coding upstream 19818 32207065 ~ 32207269 (+)
G496420 NA non-coding upstream 91756 32132298 ~ 32135331 (+)
G496403 NA non-coding upstream 125491 32101363 ~ 32101596 (+)
G496400 NA non-coding upstream 129121 32097692 ~ 32097966 (+)
G496399 NA non-coding upstream 130103 32096759 ~ 32096984 (+)
G496470 NA non-coding downstream 34231 32262355 ~ 32263061 (+)
G496486 NA non-coding downstream 57952 32286076 ~ 32286354 (+)
G496500 NA non-coding downstream 77702 32305826 ~ 32306305 (+)
G496505 setbp1 non-coding downstream 92389 32320513 ~ 32325960 (+)
G497117 NA non-coding downstream 162445 32390569 ~ 32390818 (+)
G495920 LOC106584987 other upstream 914350 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 1216483 31006547 ~ 31022524 (+)
G495132 NA other upstream 1494197 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 1650331 30576105 ~ 30576756 (+)
4ebp2 LOC106585258 other upstream 1703704 30517976 ~ 30523383 (+)
polk polk other downstream 699794 32926258 ~ 32936958 (+)
LOC110525799 LOC106585046 other downstream 918343 33135282 ~ 33165186 (+)
c6h22orf39 cssa24h22orf39 other downstream 1089513 33317578 ~ 33320353 (+)
LOC110525816 LOC106585060 other downstream 1233511 33447246 ~ 33465055 (+)
G499111 NA other downstream 1923016 34151140 ~ 34151737 (+)

Expression


Co-expression Network