G496505 (setbp1)


Basic Information

Item Value
gene id G496505
gene name setbp1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32320513 ~ 32325960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU564084
TTATTATTTCACACAATGAATAACATGAACAAGTTCAATTTCATCTTAATAAGTGCCCAATGCGGCCAGCCAGGAAAACGGTAGCAAAAGAACGAGCTTTTCCTcagagaaaagagaaaaaaaatgaaaataaagacGACAAGATCATGTTAAGTAAACATGACCAGAAGCATGCCAGCAGACATGgctatacatatacagtatattgcatGTATATGTGCATATGACATATATCTGTATATGAGTGAAGGCAAATACAAAATATGTGTACATTTACACATACATACTAAGAAGGATATATGCATATGCATGAGCATCTAAGTATTTACTTATGTCTACATGTCAAATATTTGCCATTTTTAATATTCATACAATGTACAAAAATGCTTTATGAATTAAAAATCCATTACAAAAACAAACATATCAAACAATGTACAAGTCTTGCTCCAAATGCAACTGAAAGTCAACTTCTCCGCTCGTCTAAAATCGTAATGCATACAATCAAGTGGAGCATGCAAATAAAGTTAAACCCACTCTAGTAAAAAGGTTCAAATACACTATGTATTCCAACTCAAATATGCCAACACAGTTAAGAGCTCACTTTGTGCTCTTGCAAAGTACATTTATTGGTTTCCTCATCGACGCTTCGTCTGCGTGTTCAGCGTTGAACAACATTAAAGCTTGGAAACATAACACATATGTTAATGACTACACATATTATAGTAGAGACTGTGGCTGCTTCTCAAATGACTCCATACCAGCGCACTGCGTTGGAACAGGTTCTGtggtagtacactatgtaggctGTGATTTGAGGCGCATGCAGTATGATTCAGCTCCAGTGGCTGTCCTGGACTGGTCAGACTGGTCTCAGTGTAGAGGCAGAGGTCTTCCCTAACCACTGATCCAGGACCAGATGTTCCTTCTTCCCCCTGATGATGAAGATTAGGATTTAGGGTTGGGTAAACTTCTACCTGGAGTCATACCAGTCATACAGTTGGACCAGAGTGAATACAGAACCCAGTACATAACAAAAGACCGCAAAACCCAACTTGACCGTACGGGACTGTACTGGACCACGCGATGGGTCTTGTGTAGCGTTAAAGCAGAGGATCGGGACAATACTAGTCAGCTGTAGAAGGCACCGGAACATCggctggtagagagagaaacagacagatccTAGTGGCTTTAACTCAAACATCAGAGACCGACCATGGAATATTGAGCTGCCAAGCCTATAGACCCCTTAAACCACATCTAGATTCATTAGACCAATCCTAGACTACATCTAGATTCATTAGACCAATCCTAGAATACATCTAGATTCATTAGACCAATCCTAGAATACATCTAGATTCATTAGACCAATCCTAGACTACATCTAGACTCATTAGACCAATCCTAGACTACATCTAGATTCATTAGACCAATCCTTGACTGCATCTAGATTCCTTAGACCAAACCTAGACTACATCTAGATTCCTTAGACCAATCCTAGACTACATCTAGATTCCGTAGACCAAACCTAGACTACATCTAGATTCCTTAGACCAACCTAGAATATATCTAGATTCCTTAGACCAACCTAGACTACATCTAGATTCCTTATGAGATCCAGTTCAGGCTCAGTCTCTGCGCAGTGTGtgagctgacacacacactgacaaggaCAGGTGTATTTTTGGTAATGCCCTCTGAGCAAgtcccacacacacgcacacactgctgCACTAGGCACCCATTGGCTCAGGGGAGTATAGCTGCTAGCCAATGAGGGTTCTTGGTCTTAGCTGAAGTGCAATGAGAGACACTATCATAGGCTGGCACAGGCCCTGGGATCTCAACCTTGCGATGATTGTTTGACGAACATTCTAATTGATGGATGGATAGGGACTGACTTATGGGGTCTTGCTGGCTCTAATGTCAAATGTGGTCTAAGATAGGTCTGTGGTCTACGATAGGTCTGTGGTCTATGATAGGTCTGTGGTCTACGATAGGTCTGGGGTCTACGATAGGTCTGGGGTCTAcgataggtttaggtttaggctaTACCAGCGTACGTAACTGAGCCCAGTTTGTATCCATGCAggcagaacacaacagaacacaacagaacagacaCTATTTACAACAGACAAACACTTCAGTACTGGAGCTTGACTTCTGATTAAGGCAGCACTGCAGGGAGCTGCAGTCACTAAAGTTGACATGAAATGATAGTCACTTTCTGCACAACGCTTTACaaattattactgttattattcaCACTTCTGGTTAAATGACTTCATGTTTTATTGGGTAAATAAGACACTTATTTGTCTTTGTGGAAGGGTGGATTCCCTCAGACAGCCCAGGCCAGACCTGATGCATAGCAAACAACTACGTAAGACAGCATGGTTCCCAATACAACTCCCCTGGCACAGCCTGTCCACCGCCTGGGGCCTGGTTCCATTTAAGTTCAGGGCCCCTTTCCCTGGCTCTTACCACCTCCGTTGCTCACAGCGCTCAGATATGAAAGGACTGGATGTGTGTAATAGTGTACGTGATGGATCCATTTTTCGTTCCCATAGAGCTTAAACGAGCCTTTTAACATCTGTTCACTCCAAAGAGCCAGGGTGAGCACAAGGGGCTTGCAACTGAAATGGAATCAGGCCTGTTGTACGTATGGCTGCAAAGGGACACAGGTAGTGCCCGCGTTGTGGTTGCTAAGACACACGTGTCGTAAATGCACAATCATAAGTACGTGGTTTCAATCGCAGTAACTTCTCCACCATTTTGAATTCCCCCAAAATGAGATGTGATGGTTTAAGAAACAAACATAAGGCACGTGCAGAACTGCTGGAGCTGACAAGACcctcacagagagaggagaggcttcCCAAgtttacattacatttacaggtCCCCAATGAAATACTGACCCACTGGTATTTTCTGAAATACTGAAGACATGATAGCTAGCTGGTGTGTTTAACTGCAGATTGAGAATGCTGACAACCCCACACCTGACAAGTCTGTGAAACACACATATCTCTGAGACTTTGGTTTTCCTATTCCAATCTTTACATTTTGTGTTatgttgtttttcaaccactactcAGACAGAATCTTTAGAGTACCACACACTCACTACAAAACACTGATCATTAACCCTCCTCCAGCTTCACTGTCCAATCAAATCTCAGACTTGGGCTTAGGTTTGACACCATTGGCTGAGCGTCCTGCATATTCAAATTGATTAAATGAATGCACATGTTTCTGAATGGATATTCACCATTGAAGTCAAGGCCAAAACGTAAGGCTAGAACAAGCATGTAAGTGCTGACTTTTGATTAAATGTAAGCGTATGTTTATATAGTGCATTAAAACCAAGGTTTCGTCAAACACGCCTGATATTCCCATGTGTGTGATGGCCTTCTCATACACAAAATAAATGAATGTGGTTCCTTCAGTCTGAAAACAAACAGGTCTTGAGTCCCATCCAGGTCTATTTTTGGTAATAAAACAACAATCCCGACGTTTATGGTCTATTGTACAACACTTCTATTTGATATAAGCCAGTACATGTAGATAGGCTGTTCTCCCCGTGGTAAAAAGCGGGTGAAAGTGGAGTATGCTCCTATGTACAGTTAGACCACAGCTGTAGAGACCTACAGCCAGGGAAGCTCAGTCCAACATATTGCCTTTATAGTATCCATGCCCAGGACAGGGCAGGGGGAGTAGACAGGGTGTAGAAGGGGCTAGTGGGTAGGGTGAGTTACTGGTCTTAGATCCTGTGGGTATGAGAGGTGAGGGATAGAAGGGTGAGTGGGGTAAGGTAGGTAGGTGGTCATTAACTAGCTTCATTAGAGAAGGCAAAAAAATGATCAGAGCTGCACAGTATCATATTATCCAATCACCACCCCCCAGTCTGCTGGTAGAGACGTGGCTAATGCCACATTCAGATAAAGAGTATTATAAAGTACCATAGTATCTCATACTGTATAGTACCATAGTATCATACAGCATCTTATCAAAGAGTGCCGTATAGTATCAGATATTGTAGCATAAAGTACCATACATAGTATCATATTATAGGACGGTACGCATCATTATATCACATACATATATGATAAGAGAATGTTCGTCCTCAGTGGCACTCTCATTCAGAGTGCAACACTCCTCCCCTCTTAACTCGTTCAGAGTTAAACACTACTCCTCTCCTAATGTTCCTTCATAGAGACCTACTGCAGTCACTCTCCTTATATCCAATCATAGAAGAAAAACAGACAAGCCATTAGGTCAAAGTGCACAGAGGTGGTCCCAGCATTGCTGTCTGTTTGGCTGCTATTGCTGTGTTTATCACCAAGTGGGTAGGTGGTAATTACCCAGTTGTAAAGGGGTGAttaccagttggatgcattcacatgctttgaactcgttgagaaacgctgattggctaatggccaacaagcttcgttaaccataaactaaaagtaccgctatcatgcttgtaaacaaattatGGTGTTAAAAAACCATAGCTTTTTAAAAagaatgttttgttgttgcatttattTGCTGAAAATGGTGTTATCGAGGTCATTTCCTTATTAGGTGCAACGATAGTTgcgtttcccactagtaattaccagttggagagGCGTTCCCGTGGATTTTTCCAGTCGTATGTGGTAAATACTACCTTCCCACTTGGTTTTGAATGCAGCATTTGGCCAGTGTTGGCTCCTCTCACCAGCTCTCTGATAGCCCAGAGCTAATCTATCTATCTGCAACTGTGATGCTGTCTGATTGGCTAGTGGAAGGCcatatcccctccctcctctctcctgcaccTCCCCCTACGTTTCCTTCCTCTGGCCGGTGGGGGCGCCAGAGAGCGTGCTCGGTGCACCACCGTCTCAATGGCCACTGAGATAGAGTCGTGATTGGAAAACTCCAGAGGCTGGGGGATGGGACTTGGTCTTAAGCTCCGCCTACCCGGTAggtccacacacctctccaacacCGGCATCCCGAAGCCCCTCCCTTCGTCCCTCCCATAACTGGTGGGTTCAGAATCATCAATAGGGTGTTTCCGGGGGCGACCAGGTCGCCTCTTGACGACGTTGTTGCCAGTCTTGGCCTGGCGCTGGAGACGCTTCACACGCAGGATCTTCTGCACGTGCTCAAAACTCCTCTGACTGTTGAGCACGTTGTTGAGAGAACACATCCTCCTGACCTCACCGTGGATCTGTTCCACCTCATGACGCTTATACCTCCT

Function

symbol description
setbp1 Predicted to enable DNA binding activity. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 29. Orthologous to human SETBP1 (SET binding protein 1).

NR:

description
SET-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU564084 True 5266 lncRNA 0.44 2 32320513 32325960

Neighbor

gene id symbol gene type direction distance location
lnpep LOC106585016 coding upstream 69945 32232088 ~ 32250568 (+)
erap2 LOC106585017 coding upstream 95681 32211361 ~ 32224832 (+)
rgmb LOC106585015 coding upstream 119149 32188430 ~ 32201364 (+)
LOC118965021 NA coding upstream 303134 32014529 ~ 32017379 (+)
LOC110525771 LOC106585012 coding upstream 307479 32003116 ~ 32013034 (+)
cdk7 cdk7 coding downstream 77451 32403411 ~ 32409712 (+)
serinc5 LOC106585022 coding downstream 88425 32414385 ~ 32469172 (+)
mtx3 mtx3 coding downstream 159904 32485864 ~ 32507844 (+)
LOC110525781 LOC106585026 coding downstream 206805 32532765 ~ 32537679 (+)
LOC118965022 NA coding downstream 282476 32608436 ~ 32620481 (+)
G496500 NA non-coding upstream 14208 32305826 ~ 32306305 (+)
G496486 NA non-coding upstream 34159 32286076 ~ 32286354 (+)
G496470 NA non-coding upstream 57452 32262355 ~ 32263061 (+)
G496429 NA non-coding upstream 92389 32227087 ~ 32228124 (+)
G496460 NA non-coding upstream 113244 32207065 ~ 32207269 (+)
G497117 NA non-coding downstream 64609 32390569 ~ 32390818 (+)
G497146 NA non-coding downstream 115611 32441571 ~ 32444538 (+)
G497153 NA non-coding downstream 138070 32464030 ~ 32465412 (+)
G497253 NA non-coding downstream 328011 32653971 ~ 32713205 (+)
G497402 NA non-coding downstream 611924 32937884 ~ 32938090 (+)
G495920 LOC106584987 other upstream 1007776 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 1309909 31006547 ~ 31022524 (+)
G495132 NA other upstream 1587623 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 1743757 30576105 ~ 30576756 (+)
4ebp2 LOC106585258 other upstream 1797130 30517976 ~ 30523383 (+)
polk polk other downstream 601958 32926258 ~ 32936958 (+)
LOC110525799 LOC106585046 other downstream 820507 33135282 ~ 33165186 (+)
c6h22orf39 cssa24h22orf39 other downstream 991677 33317578 ~ 33320353 (+)
LOC110525816 LOC106585060 other downstream 1135675 33447246 ~ 33465055 (+)
G499111 NA other downstream 1825180 34151140 ~ 34151737 (+)

Expression


Co-expression Network