G497117


Basic Information

Item Value
gene id G497117
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32390569 ~ 32390818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU564788
caaaactaaacatggtggtgttcgccttagcaatctcactaggataaagacctcctccattcctgtcattattgaaagagatcgtgatacctcacatctcaaaatagggctacttaatgttagatcccttacttcaaaggcaattaaagtcaatgaactaatcactgatcataatcttgatgtgattggcctgactgaaacatggcttaagcctgatgaatttactgtgttaaatgaggcctcacctcct

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU564788 True 250 lncRNA 0.39 1 32390569 32390818

Neighbor

gene id symbol gene type direction distance location
lnpep LOC106585016 coding upstream 140001 32232088 ~ 32250568 (+)
erap2 LOC106585017 coding upstream 165737 32211361 ~ 32224832 (+)
rgmb LOC106585015 coding upstream 189205 32188430 ~ 32201364 (+)
LOC118965021 NA coding upstream 373190 32014529 ~ 32017379 (+)
LOC110525771 LOC106585012 coding upstream 377535 32003116 ~ 32013034 (+)
cdk7 cdk7 coding downstream 12593 32403411 ~ 32409712 (+)
serinc5 LOC106585022 coding downstream 23567 32414385 ~ 32469172 (+)
mtx3 mtx3 coding downstream 95046 32485864 ~ 32507844 (+)
LOC110525781 LOC106585026 coding downstream 141947 32532765 ~ 32537679 (+)
LOC118965022 NA coding downstream 217618 32608436 ~ 32620481 (+)
G496505 setbp1 non-coding upstream 64609 32320513 ~ 32325960 (+)
G496500 NA non-coding upstream 84264 32305826 ~ 32306305 (+)
G496486 NA non-coding upstream 104215 32286076 ~ 32286354 (+)
G496470 NA non-coding upstream 127508 32262355 ~ 32263061 (+)
G496429 NA non-coding upstream 162445 32227087 ~ 32228124 (+)
G497146 NA non-coding downstream 50753 32441571 ~ 32444538 (+)
G497153 NA non-coding downstream 73212 32464030 ~ 32465412 (+)
G497253 NA non-coding downstream 263153 32653971 ~ 32713205 (+)
G497402 NA non-coding downstream 547066 32937884 ~ 32938090 (+)
G497740 LOC106585045 non-coding downstream 698149 33088967 ~ 33103783 (+)
G495920 LOC106584987 other upstream 1077832 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 1379965 31006547 ~ 31022524 (+)
G495132 NA other upstream 1657679 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 1813813 30576105 ~ 30576756 (+)
4ebp2 LOC106585258 other upstream 1867186 30517976 ~ 30523383 (+)
polk polk other downstream 537100 32926258 ~ 32936958 (+)
LOC110525799 LOC106585046 other downstream 755649 33135282 ~ 33165186 (+)
c6h22orf39 cssa24h22orf39 other downstream 926819 33317578 ~ 33320353 (+)
LOC110525816 LOC106585060 other downstream 1070817 33447246 ~ 33465055 (+)
G499111 NA other downstream 1760322 34151140 ~ 34151737 (+)

Expression


Co-expression Network