G497153


Basic Information

Item Value
gene id G497153
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32464030 ~ 32465412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU564828
gtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactggGGAAACTCTTACTgctagtagagttactgtggaaacccttactactagCGCAGTCactgtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactgtggaaactCTTACTGCTAGTAGAGTTACTGGGGAAACTCTTGCTgctagtagagttactgtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactgtggaaactcttactactagtagagttactggGGAAACTCTTGCTgctagtagagttactgtggaaacccttactactagtagagttactgtgaaaacccttactactagtagagttactgtggaaacccttactactagtagagttactgtgaaaacccttactactagtagagttactggGGAAACTCTTACTgctagtagagttactgtggaaacccttactactagtagagttactggGGAAACTCTTGCTgctagtagagttactgtggaaactcttactactagtagagttactgtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactggGGAAACTCTTACTgctagtagagttactgtggaaacccttactactagcgcagttactgtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactgtggaaacccttactactagtagagttactgtggaaactcttactactagtagagttactgtggaaactCTTGCTgctagtagagttactgtggaaacccttactactagtagagttactgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU564828 True 993 lncRNA 0.41 2 32464030 32465412

Neighbor

gene id symbol gene type direction distance location
cdk7 cdk7 coding upstream 54318 32403411 ~ 32409712 (+)
lnpep LOC106585016 coding upstream 213462 32232088 ~ 32250568 (+)
erap2 LOC106585017 coding upstream 239198 32211361 ~ 32224832 (+)
rgmb LOC106585015 coding upstream 262666 32188430 ~ 32201364 (+)
LOC118965021 NA coding upstream 446651 32014529 ~ 32017379 (+)
mtx3 mtx3 coding downstream 20452 32485864 ~ 32507844 (+)
LOC110525781 LOC106585026 coding downstream 67353 32532765 ~ 32537679 (+)
LOC118965022 NA coding downstream 143024 32608436 ~ 32620481 (+)
LOC110525782 LOC106585028 coding downstream 182281 32647693 ~ 32667410 (+)
LOC110526889 NA coding downstream 202285 32667697 ~ 32668444 (+)
G497146 NA non-coding upstream 19492 32441571 ~ 32444538 (+)
G497117 NA non-coding upstream 73212 32390569 ~ 32390818 (+)
G496505 setbp1 non-coding upstream 138070 32320513 ~ 32325960 (+)
G496500 NA non-coding upstream 157725 32305826 ~ 32306305 (+)
G496486 NA non-coding upstream 177676 32286076 ~ 32286354 (+)
G497253 NA non-coding downstream 188559 32653971 ~ 32713205 (+)
G497402 NA non-coding downstream 472472 32937884 ~ 32938090 (+)
G497740 LOC106585045 non-coding downstream 623555 33088967 ~ 33103783 (+)
LOC110525799 LOC106585046 non-coding downstream 669911 33135282 ~ 33165186 (+)
G497749 NA non-coding downstream 714903 33180315 ~ 33183152 (+)
G495920 LOC106584987 other upstream 1151293 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 1453426 31006547 ~ 31022524 (+)
G495132 NA other upstream 1731140 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 1887274 30576105 ~ 30576756 (+)
4ebp2 LOC106585258 other upstream 1940647 30517976 ~ 30523383 (+)
polk polk other downstream 462506 32926258 ~ 32936958 (+)
c6h22orf39 cssa24h22orf39 other downstream 852225 33317578 ~ 33320353 (+)
LOC110525816 LOC106585060 other downstream 996223 33447246 ~ 33465055 (+)
G499111 NA other downstream 1685728 34151140 ~ 34151737 (+)

Expression


Co-expression Network