G497749


Basic Information

Item Value
gene id G497749
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33180315 ~ 33183152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU565514
GCTTGCATTTTGTCTcggaaagtgatcttgactcagaaaaggttggtgaccactgctttaCATGGTTTGTATTCCTGTGTATTTATTCCCGTTCAGGACAGTTGTTTCTGCAGATAAGTTACTTAGTTGTACTGTGATGCTGGTAAAACTGATACCAGTATGCAAACTGCTGTATGGCTGACACCATTGAAATTTTTGGACTTTGGAGGCAGTTCTGTGATGGCAGTAACCCCAGTAAAGGCAATCGGatggagatggtttgggatgtgaGGAAGAAACAGTTTCCAGCAGGAACAGCTGACAGACTGATTGATGTGTGCCtttttcaatattttatttgttttttacaTTCCTCTTAAACCAATAAGCTATTCACTCATTGCATGTACTGCACATACAGTTGAACtcgcaagtttacatacaccttagccagatccatttaaactcagttttcacaattcttgacatttaaacctagtaaaaattccctgtcttaggtaaattggaccattcctcctgacagctggtgtaacagtcaggtttgtaggcctccttgctcgcacatgcattttcagttctgcccacaaattttctataggattgaggtcagggctttttcataccttgactttgttgtccgtaagccaatttgccacaactttggaagtatgctaggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgatgcttcaatttatccacatcattttcttcactcatgatgccatctattttgtgaagtgcaccagtccctcctgcaacaaagcacccccacaacatgacgctgccacccccgtgcttcatggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacggtcattatggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtatgatctttgtccccatgtgcagttgcaaaccgtagtctggcttttttaatggcggttttggagcagtggcttcttccttgctgagtggcctttcaggttatgtcgatataggactcgttttactgtggatatagatacttttgtacctgtttcctccagcatcttcacaaggtcctttgatgttgttctgggattgatttgcacttttcacaccaaagtacgttcatctctaggagacagaatgcgtctccttcctgagaggtatgacggctgcgtggtcccatggtgtttatacttgcgtactattgtttgtacagatgaacgtggtaccttcaggtgtaccttcattttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatatatccacaggtacacctccaattgactcaaatgatgtgaattagcatatcagaagcttctaaagccatgacataattttctggaattttccaaactgatTCAAggcagttaacttagtgtatgtacacttctgacccactggaaatgtgatacagtgaaataatgtgtctggaaacaattgttgaaaaaattacttgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttaactagaaatgtgtggagtggttaaaacatgagttttaatgactccaacctaagtgtatgtaaacttccaacttcaactgtatatattttagtGTATGCTTCCTTTTTTTGCTTAAGTATTTATTGTCTGTAGAAAACAACTTGGTCAAAGCGCATCTTGAACCTTCACCCGACTCTCATTGACATCAAGGAATGGTTTTCAGGAAACTTCGACTCGCATGCATTTTTCAAGTTTTGCCATTACTGTGTACGCTTACATTGATTGATTGTTTAACATCAATATGATCAGATAGAATTTAACATTACAATGTGTATAGGTTTGATTCCAACTTGTTGTATTGACTTTTTACTTCATCCAACGTTAAACGTCTGTAGACATGGTGCCGTTTTGTAGATTGTGTAAGGATACACAGGGTGTGTTTAGAATGGAATCCGGCCAACATACTGCTTCTAGAATGAAGTGGCAGAGTGAGTCAGTATAAATGAATCTGAATTTAATTTTGAATCAGAATCTGAAGTTATAGAAACTGGCAAGGGGTGTTAATTTTATTGAAATTATAACGGGTCCTTTTACTGAAAACtacatgttttttctttgtagcTCATATTTATGTGGTAATGTCAGTTGGCAATGAAGATAATTCATTTTAGGGCTGAATTAAAATGTTATTTAGTTGCTAGGTTCCTGCTCCATAGACTACTGATTGTGCCCAATTGTTTTAATTTACACGCAACACACTATCTATTTTGGTGAAGATAATTTAGGCACACGCATGTTCCGCTGCTCAAGAGTCTCTAATTTATCAGGGTATAGGGGTCGTTTTAATATTAGGCTACTGCTTGTGTCCTTCCAGCTTCCACTTATCTGCCTTTGCGTGTAGAGGAGACAACTACAAGCTGCTCCTGTTAACACTGTAGGCGGATTGTATTTGTTGTGATGAACTTATTGGTGACACACTTTTACTATTATCTTTCTTAATAAACCACTCAAATCTACACATTGTCTGCTGCCTATTCTTCAACATAACCATCAATAATGGAATACTTGTCGCAGTAGAACAAATGAATGGCCTCATCATCAAAGATCAACAGATTCAATCTGCTAAAACAGATTGGAAAGCGCCCTTACAAGGCGGGATaatgatttaaatggtttcactgtccagaccCATCTACACTTGTGAGATATTCAGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU565514 True 2838 lncRNA 0.39 1 33180315 33183152

Neighbor

gene id symbol gene type direction distance location
LOC110525801 ppc1a coding upstream 3155 33173522 ~ 33177160 (+)
LOC110525799 LOC106585046 coding upstream 15129 33135282 ~ 33165186 (+)
iqgap2 LOC106585041 coding upstream 87573 33008191 ~ 33092742 (+)
sv2ca LOC106585040 coding upstream 176196 32969862 ~ 33004119 (+)
LOC110525793 NA coding upstream 214235 32960820 ~ 32966080 (+)
LOC110525805 LOC106585050 coding downstream 96046 33279198 ~ 33280948 (+)
LOC110525806 LOC106585051 coding downstream 130203 33313355 ~ 33317175 (+)
c6h22orf39 cssa24h22orf39 coding downstream 134426 33317578 ~ 33320353 (+)
LOC110525808 LOC106585052 coding downstream 138787 33321939 ~ 33326388 (+)
LOC110525811 rpl6 coding downstream 144351 33327503 ~ 33331597 (+)
G497740 LOC106585045 non-coding upstream 76532 33088967 ~ 33103783 (+)
G497402 NA non-coding upstream 242225 32937884 ~ 32938090 (+)
G497253 NA non-coding upstream 467110 32653971 ~ 32713205 (+)
G497153 NA non-coding upstream 714903 32464030 ~ 32465412 (+)
G497849 NA non-coding downstream 9926 33193078 ~ 33197388 (+)
G497852 NA non-coding downstream 14990 33198142 ~ 33198539 (+)
G497853 NA non-coding downstream 16113 33199265 ~ 33199491 (+)
G497855 NA non-coding downstream 25698 33208850 ~ 33209789 (+)
G497921 LOC103397138 non-coding downstream 149498 33332650 ~ 33336735 (+)
polk polk other upstream 251464 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 1867578 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2169711 31006547 ~ 31022524 (+)
G495132 NA other upstream 2447425 30732352 ~ 30732890 (+)
LOC110525816 LOC106585060 other downstream 278483 33447246 ~ 33465055 (+)
G499111 NA other downstream 967988 34151140 ~ 34151737 (+)
fancc fancc other downstream 6086807 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6490860 39673964 ~ 39680031 (+)

Expression


Co-expression Network