G498484 (rpl6)


Basic Information

Item Value
gene id G498484
gene name rpl6
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33327507 ~ 33330504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU566350
GCTTGTGTATATCTAGTAGTGTGGGGTTGACCTCTTTCTCTGTGTCAAAGATCTCTCCTTCCTGGTGGCGGGGTCTCCTCAGCCTCTTCTTCTTGAAGTAGGCATCTGACAGAGTCTTGGGGATCTTCATGCCAGAGATGTCAACCTTGGTTGCTGTGGCAATGACAAACTTCTGGTGTGCCCGGCGCAGGGGAACACGGTTCAGGGCCAGGGGACCTAGAGGATGGAGAAAGCAAGAGGGTGATTGAGTTACAACTGAAAACGCAAGAACAGCATACTTTTCCAAACCTCACATCAAGATAAGGCTACCTAACGGGGTACTGCAGCTGCACAGACGTGAATGTGAGCTATAAAATCTCACTGGACATTCCGACCAGATCTACTCTATGCAACACTTGTTTGGCCAATTCACTGATTAATAGGAATGTTTCAAAGCACTGGTTGTTCTTACCAGTTACAAGCAGGAGACCACTGGAAAGCTGCTTCAGGAACACAACACgCTTTCCACGGTGGCGCCCAGTGAGTAGTACAAGCACGGTTCCTGGGGTGATGGTGGCACGCAGGTTCCTCTTGTGCTGGCTGAAAGGCTTCTTACCATGGTTCTTCAGCTTATGGGGCACATCCTCTGTGGGGTAGTAACGGGGCATCTTACGTATCTTGACAACACGAGTGCCTCCATTCTTGTCTCCACCAACAGTCTTGGTGATTGTGGATGGAGTCTTGACCTTCATCTTCTTCTCAATCTTGGTCTCAGTGGTCTTGGTCTTTCTCTTGTACATGGCCCTGCGGGCGTACATGGCGGTGCGGGAGTAGCGACCAATGCCCCTGGCCAGGACAGGGTTCCGGCTGCAATGAGCCTTCTTGGCCACCTTCTTCTTGTCTCCCTCTGCCATCTTGGGACAGACCAGGGGACCCGAATGGGTTAAAACATATGGATACAATACTATAGAACAATATTTATATAATCACTGGATGCATTACTGGTGAATCATGAACTGATCATACTGGCTAGCTAGATCCTTTGATGGTATGATGCTCAGAGGTTGCAGGTCATAGGTCAGGAGAGATAGCTAACTAAGTTAAGCACATTTGTGGCTCCAGATATTCAATAACAGGTAACCAAAGTACTAGTTTGTCATATTCCAATACAATATAACCAGCAGGCCCCATACTGGGAGGTGGCCTTTTAGCCATTGTTATTAAGTGGTTAGTTTGCCATAAACATTTCGATAGATCACATCTGCGACTTGCTAGCATAACAGAAACAAATAAATGCCAGCGTGCAGGTAAAACTCTGACATTTTAAACAGTCAATTAACTAGTTAGGCACGACAGACTTGTCAATATGCCAGAGTTGGCCAAAACACCTCAAACCTGGGAGTGAACACGCACGCATGACGTTATACCTTAGCCGGTAGCTACATCTAGCAATCTAGCTGGCTAACCTTTTGACTATTTCGGCAATTCTCTATAATATACCATTACACATAGATAAGTAATATCCGGTGACAAGCCACTAACGTATAAACCAGGGTACATAAACATAATATTGGTCAAACGTGAAATCTGCTCAAGTTACAACGCGTTGCGCTAGCATGTAGCCGTGGGCCTACATTTCCGAAACATAAAGCAATTTATTTACAAGGcaccacacaaaacacaacaattGTCATACATATTAACTGCTTAGGATACAAATAACATTCCCATGCGAATGGGAAATGGTTATTTAGTCCATTTTGCACAGATGAACACCGATTTTCTTTATGAAGTTGGGTGGGGAGAAACCAATCTTACCTTTGCTATGAAAAAAAG

Function

symbol description
rpl6 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and pancreas development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; epithelial cell of pancreas; and lens. Orthologous to human RPL6 (ribosomal protein L6).

NR:

description
60S ribosomal protein L6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU566350 True 1815 TUCP 0.45 4 33327507 33330504

Neighbor

gene id symbol gene type direction distance location
LOC110525810 NA coding downstream 5651 33320253 ~ 33321907 (-)
LOC110526890 cdc45 coding downstream 14203 33298669 ~ 33313304 (-)
LOC110525804 LOC106585049 coding downstream 49308 33227813 ~ 33278199 (-)
LOC110525803 LOC106585048 coding downstream 99852 33213385 ~ 33227655 (-)
LOC110525802 LOC106585047 coding downstream 116261 33201417 ~ 33211246 (-)
LOC110525812 LOC103397138 coding upstream 2148 33332650 ~ 33336818 (-)
LOC110525813 polb coding upstream 6499 33337003 ~ 33344085 (-)
LOC110526891 NA coding upstream 239501 33570005 ~ 33576547 (-)
LOC118965076 NA coding upstream 259352 33589856 ~ 33593095 (-)
si:ch211-127m7.2 LOC106585066 coding upstream 394114 33724618 ~ 33730221 (-)
G498503 NA non-coding downstream 38670 33283582 ~ 33288837 (-)
G498500 LOC106585050 non-coding downstream 46576 33279227 ~ 33280931 (-)
G498493 NA non-coding downstream 60652 33266533 ~ 33266855 (-)
G498516 NA non-coding upstream 18024 33348528 ~ 33348859 (-)
G498486 NA non-coding upstream 29346 33359850 ~ 33364334 (-)
G498520 NA non-coding upstream 38457 33368961 ~ 33369198 (-)
G498522 NA non-coding upstream 43231 33373735 ~ 33374130 (-)
G498535 NA non-coding upstream 60088 33390592 ~ 33390885 (-)
LOC110525784 LOC106585031 other downstream 644660 32680037 ~ 32682899 (-)
G496851 NA other downstream 1434858 31843463 ~ 31892649 (-)
G496777 NA other downstream 1655580 31670978 ~ 31671927 (-)
G496772 NA other downstream 1665889 31661393 ~ 31661618 (-)
G495560 NA other downstream 2751934 30575118 ~ 30575573 (-)
G498960 NA other upstream 709855 34040359 ~ 34041174 (-)
G501142 NA other upstream 2434862 35765366 ~ 35767929 (-)
hk2 LOC106585103 other upstream 3177552 36507843 ~ 36569143 (-)
vamp8 LOC106585118 other upstream 3720199 37050701 ~ 37065030 (-)

Expression


Co-expression Network