G497921 (LOC103397138)


Basic Information

Item Value
gene id G497921
gene name LOC103397138
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33332650 ~ 33336735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU565693
CAGAAAGCCAAACGATATCGCTTTAATTTAAAATCAAATTAGTGACAATCTACTGCAATAGAAAACATAAATACAAGTGTTTCATTTCTCTCACATGGCCAGGTATTTTCTTTAAACAAAGAGGAACAAAATGGTAGAAAGCAGCACAGAAAGGCAGTTCCCGTTGACCAGGAATGAAAGAGCCTTTCTGTCGAGTCAGTCAATATTTAATGGTCAGTTGATGTTAAAGGGGCTGGGGCGGCTGGCTCCTCAGCCAGACTTGAAGAGCAGGATGGCCACCTGGCCCAAGTAGAAGTAGATGAAATGCTTGGTCTCATGGGTCACGTAGCTGCCAAAGTTCCTCCCTACAATGCAATGCCAGGTGGGGTTGTACTTCTTGTCAAACTCCTTCTTGATGTATGCGGCAATGTCTTTCTCGATGTTGTACTTCTCCAGAGCCTGCGTGGCACACTCCACTGCATCCTGCTGCATCTCCTCTGACATGTCGGCATTTTTTATGACTGCTTTTCTGTCAGACATGGTTGCCCTTATTTTCCAACGCCGGTTGTCTCTGCTATATGGACGCTTGATTTCACAGCTACAACTCCCGCTAAGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU565693 True 596 lncRNA 0.45 3 33332650 33336735

Neighbor

gene id symbol gene type direction distance location
LOC110525811 rpl6 coding upstream 1053 33327503 ~ 33331597 (+)
LOC110525808 LOC106585052 coding upstream 6262 33321939 ~ 33326388 (+)
c6h22orf39 cssa24h22orf39 coding upstream 12297 33317578 ~ 33320353 (+)
LOC110525806 LOC106585051 coding upstream 15475 33313355 ~ 33317175 (+)
LOC110525805 LOC106585050 coding upstream 51702 33279198 ~ 33280948 (+)
LOC110525814 LOC106585056 coding downstream 15937 33352672 ~ 33367435 (+)
LOC110525815 LOC106585058 coding downstream 83678 33420413 ~ 33439671 (+)
LOC110525816 LOC106585060 coding downstream 110511 33447246 ~ 33465055 (+)
LOC110525817 LOC106585059 coding downstream 129257 33465992 ~ 33508271 (+)
LOC110525819 slc25a1 coding downstream 178515 33515250 ~ 33568701 (+)
G497855 NA non-coding upstream 122861 33208850 ~ 33209789 (+)
G497853 NA non-coding upstream 133159 33199265 ~ 33199491 (+)
G497852 NA non-coding upstream 134111 33198142 ~ 33198539 (+)
G497849 NA non-coding upstream 135262 33193078 ~ 33197388 (+)
G497749 NA non-coding upstream 149498 33180315 ~ 33183152 (+)
G497925 NA non-coding downstream 10340 33347075 ~ 33347369 (+)
G497933 NA non-coding downstream 31979 33368714 ~ 33368925 (+)
G497939 NA non-coding downstream 42171 33378906 ~ 33379166 (+)
G497944 NA non-coding downstream 47889 33384624 ~ 33384857 (+)
G497945 NA non-coding downstream 48426 33385161 ~ 33385378 (+)
LOC110525799 LOC106585046 other upstream 168389 33135282 ~ 33165186 (+)
polk polk other upstream 403799 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2019913 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2322046 31006547 ~ 31022524 (+)
G499111 NA other downstream 814405 34151140 ~ 34151737 (+)
fancc fancc other downstream 5933224 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6337277 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 6398049 39734703 ~ 39750180 (+)

Expression


Co-expression Network