G497946


Basic Information

Item Value
gene id G497946
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33385727 ~ 33386632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU565723
cattcaagtactatttcctacattgttgaataatagttaagacatcaacactataaaataacacatatggaatcatgcagtaaccaaaaagtgtttaacaaatcaaaatatattttatatttgagattcttcaaatagccaccctttgccttgatgacagctttatacactattggcattctctcaaccagcttcatgaggtagtcacctggaatgcttttcaattaacaggtgtgccttgttaaaagttcatttgtggaatttctttacttcttaatgTGTTGGAaccagttgttttgtgacaagttaagggtggtatacagaagatagcactatttggtaaaataccaagtccatgttatggcaagaacagctcaagtaagcaaagggaaacgacagtccatcattactttaagacatgaaggtcagtcaatcttgaaaacttcaagaactttgaaagttttttcaagtgcagtcacaaaaaccattaagcgctatgatgaaactgtttctcatgaggccaccacaggaaaggaagacccagagttacctcctgctgcaaaggataagttcattagagttactagcctcagaaattgcagcccaaataaatgcttcacagagttcaagtaacagacacatctcaacttaAACTGTtccgaggagactgtgtgaatcaggccttcatggttgaattgctgcaaagaaaccactactaaaggacaacaataagaagaagagacttgcttgggccaagaaacacgagcaatggacattagaccggtggaaatgtgtcctctggtctgatttttggttctttgtgagacgcagaataggtgaacggataatctctgcatgtgtggttcccaccgtgaagcatggaggacgtGTGATGGtttcggggtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU565723 True 906 lncRNA 0.39 1 33385727 33386632

Neighbor

gene id symbol gene type direction distance location
LOC110525814 LOC106585056 coding upstream 18292 33352672 ~ 33367435 (+)
LOC110525811 rpl6 coding upstream 54130 33327503 ~ 33331597 (+)
LOC110525808 LOC106585052 coding upstream 59339 33321939 ~ 33326388 (+)
c6h22orf39 cssa24h22orf39 coding upstream 65374 33317578 ~ 33320353 (+)
LOC110525806 LOC106585051 coding upstream 68552 33313355 ~ 33317175 (+)
LOC110525815 LOC106585058 coding downstream 33781 33420413 ~ 33439671 (+)
LOC110525816 LOC106585060 coding downstream 60614 33447246 ~ 33465055 (+)
LOC110525817 LOC106585059 coding downstream 79360 33465992 ~ 33508271 (+)
LOC110525819 slc25a1 coding downstream 128618 33515250 ~ 33568701 (+)
LOC110525821 LOC106585065 coding downstream 214052 33600684 ~ 33691211 (+)
G497945 NA non-coding upstream 349 33385161 ~ 33385378 (+)
G497944 NA non-coding upstream 870 33384624 ~ 33384857 (+)
G497939 NA non-coding upstream 6561 33378906 ~ 33379166 (+)
G497933 NA non-coding upstream 16802 33368714 ~ 33368925 (+)
G497925 NA non-coding upstream 38358 33347075 ~ 33347369 (+)
G497948 NA non-coding downstream 1547 33388179 ~ 33388419 (+)
G497958 NA non-coding downstream 14576 33401208 ~ 33401525 (+)
G498010 NA non-coding downstream 126598 33513230 ~ 33513454 (+)
G498018 NA non-coding downstream 135689 33522321 ~ 33522610 (+)
LOC110525799 LOC106585046 other upstream 221466 33135282 ~ 33165186 (+)
polk polk other upstream 456876 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2072990 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2375123 31006547 ~ 31022524 (+)
G499111 NA other downstream 764508 34151140 ~ 34151737 (+)
fancc fancc other downstream 5883327 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6287380 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 6348152 39734703 ~ 39750180 (+)

Expression


Co-expression Network