G498174


Basic Information

Item Value
gene id G498174
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33778218 ~ 33779928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU565963
CTAAAATATTTTATTATGAAATACATGAAATTGAAAGGACagacatacatgcacacacacacgctcacacacacacacacacacacgcacacacacacacactcgctcacacacactcgctcacacACAATATACAGCAACCTTTTAAAAGCTGAGGGTTGATATAGGTGTAATAGAATTGTTGTACCACATCTCAAAGTACTGTATACAGTCATACACATGCACATAGTCACACAGATCAATATCTACCAGGAAAGTAAGTACTGCTTCAGAaatgtgcgtgcacacacacaacctaacacacacacacacacaaaacattccCTCGTTTGAGCTATTGTAGTTGATTCATCATGTACATAATTCACAATCTTAAGGAACTCTGGTCCTCTCTATGTTTTGTGCTTCAGTCTCTAGCTATGCTAGTAGAGCAGACACACCGGTCAtaccacactatactacactatgtgATTATAACCCTGGCATAACCCTggtatggggtggcaggtagcctagtggttagagcattggtccagtaactgaaaggttgctggatcgaatccccgagctgacaaggtaaaaaaatctgtcgttctacccctgaacaaggcagttaacccactgttccccggtaggccgtcattgtaaataagaattagttcttaactaacttgcctagttaaataaaggtaagaaAAAAAATAACACAGGTAGCAGAAATGCATGTTTTTTCCATTCCACTAGAATTGGTTAGGAGACAGTTTTAGATGAACTGTGACAAGAACAGTCATAAAGTTACATTACAATTCCTGCCTCTGTAGAGCTGATCATGGAGATAGTACTGTACCTCACTTGTGTGACAGGCATGTTTCAACACCACATACTGTCACAGGACAGGAGTCATTCAACCCCCCTACCGACTGACTGGGTGGGTGAGAATCTCATCTAGTGTGGGATGCCACTCTTGAGTCTAAGGCAGGTTCTGGTTTGGAGAGGGAGACAATCAGTTATCTGCAGGTTGCAAAATGGGGCTTTGGCCAAAAATAGAAAATACAAATAtgcaaggagagagaggtagggagaataATGGATGGAAAGAGATAGATATATCTAACTCAGTAGAACTAACAAAGAGATGTAGATGTGCTTTAGGTTATTTTGCATCTGAGTGGTATAGGACATGGGACAGTCTAAAATGCCCCATACAGACCCACAAGAGAAAAGTGCCAAACCTTACCTTCATTATTAACCATTATTATTGCTGATATGGATACAGTTAATATGCAGATATCACGACAGAGAGGCAGGTGTGTCAGAGAGGGATTGGGACAGCAAGGAGGATATGTACTGTTTGTTCTTGGTATGGACGGAAAGAGCAGACATCATGTTTCATAATGACCCCAACCTCAACTGAGGAAGTTACCACACACAACCCAGCTCACAGAATTAGTACACTGTCCCTATAGAGGTCTTGGAAGAGATTAAAGCGAGGTTAGAATGGATGCCTCTCCCCGGGGTGGTTCAGGGTCACTCCTGTTTGGGGCTTGGGACGGCATCTGGGGTTGGGAGGGGTAGCTAAGGAGGTCAGGGAGATTTTGGGAAGATCTGGTGGTCCCTCCCTAGACCGGGTCACATACATGCAGTCCCCTCAGGAAGACAACGCAGCTGCTTCTCAATGATACACCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU565963 True 1687 lncRNA 0.44 2 33778218 33779928

Neighbor

gene id symbol gene type direction distance location
LOC110525824 LOC106585069 coding upstream 11738 33756104 ~ 33766480 (+)
LOC110525823 LOC106585068 coding upstream 28289 33729096 ~ 33750556 (+)
LOC110525821 LOC106585065 coding upstream 87007 33600684 ~ 33691211 (+)
LOC110525819 slc25a1 coding upstream 209517 33515250 ~ 33568701 (+)
LOC110525817 LOC106585059 coding upstream 269947 33465992 ~ 33508271 (+)
fahd2a LOC106585073 coding downstream 190475 33970403 ~ 33973787 (+)
LOC110525024 NA coding downstream 497297 34277225 ~ 34278881 (+)
LOC110525834 LOC106584952 coding downstream 512849 34292777 ~ 34298399 (+)
LOC110525837 LOC106585079 coding downstream 596223 34376151 ~ 34414688 (+)
LOC118964863 NA coding downstream 809615 34589543 ~ 34594418 (+)
G498018 NA non-coding upstream 255608 33522321 ~ 33522610 (+)
G498010 NA non-coding upstream 264764 33513230 ~ 33513454 (+)
G497958 NA non-coding upstream 376693 33401208 ~ 33401525 (+)
G498191 NA non-coding downstream 31015 33810943 ~ 33887959 (+)
G498249 LOC106584951 non-coding downstream 108088 33888016 ~ 33905923 (+)
G498275 NA non-coding downstream 148251 33928179 ~ 33928412 (+)
G498056 LOC106585071 non-coding downstream 168054 33947982 ~ 33950792 (+)
G498061 NA non-coding downstream 171563 33951491 ~ 33951884 (+)
LOC110525816 LOC106585060 other upstream 313163 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 457870 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 613957 33135282 ~ 33165186 (+)
polk polk other upstream 849367 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2465481 31294946 ~ 31312737 (+)
G499111 NA other downstream 371212 34151140 ~ 34151737 (+)
fancc fancc other downstream 5490031 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 5894084 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 5954856 39734703 ~ 39750180 (+)
G505988 NA other downstream 6182724 39962652 ~ 39963098 (+)

Expression


Co-expression Network