G503159 (LOC106580514)


Basic Information

Item Value
gene id G503159
gene name LOC106580514
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37331484 ~ 37336552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU571387
AAATACTCTTATATACAGCATATACCAGATCTTTCACTCACCTTTCTCCTATATCCCTCCATTGTGTTTCTAACCTTACGCATATCCTGAAAATTATACAGTCAACATGTTCTTAACAGAGATATCCATGACAGTTCAGCAAAGAGCCTCCTAGTTTAAAAGCAGAAACTGTTGCTGGGATTTTGGACACATTGAAATTGACAGCTATGGGAAATGTAGTGCTCCATGTGCATGTTGTATTCCCAGTTCATTTATGTTAGGTGTCATATGCTGTCAGCTGTTAGTCCACGCCACCTTGTACTGTCCTTTGCAGGCATTCTAGAAGAGTCTTGGTGTGTAAGTGGGTCAGCATTTTACATCTATGTACTGTACAGAGTCCGCAGTGGacccacgttttgctgtgctctGTCACACAGCGGTCAGTGCCTACAGGTGACAACTCGGTCTGTCAATCGCCTAAAGCGTTGTTTCGCTGACCAAGTCCCTGTGGCGGGGGTGATCAGTGTCCGTGTCCTAGTCCGACTCCATCTCGATCTTCACCTGGGGCACGGGGAAGGCCATGCCACGGCCGTGGGCCATAGGGACCGTCGGGGACGAGGGACAGGAGATCTTCAGATGCAGGGTGATGCTGCGGTCCAGGTCAGACTCAGAGCTGGGCGAGCAGTTGGAGTAAGCGCGGTACTTCtcCTTGTCTTTGCTGTCGTctgctctccctttcttcttGTCTTTCTTCTTCGTGTCATCTTTATCGCCCTTCTTCTTCTTATCCTTCTTCTTATCTTTCCCAGGCAGGATATCATCTATCCAGGCCAGGTCGTGTTGAGAGAACACCATATCCAGCATCTTACGCAC
>TU571388
GGCGTCAGCGGGCTGAAGGAGGTCTCTGTAGGGGACGTGTAGTTTAAGCACACAGTACCTGCGGTCCAGGTCAGACTCAGAGCTGGGCGAGCAGTTGGAGTAAGCGCGGTACTTCtcCTTGTCTTTGCTGTCGTctgctctccctttcttcttGTCTTTCTTCTTCGTGTCATCTTTATCGCCCTTCTTCTTCTTATCCTTCTTCTTATCTTTCCCAGGCAGGATATCATCTATCCAGGCCAGGTCGTGTTGAGAGAACACCATATCCAGCATCTTACGCAC

Function

NR:

description
electrogenic sodium bicarbonate cotransporter 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU571387 False 852 TUCP 0.48 3 37331484 37336552
TU571388 True 282 lncRNA 0.51 2 37331484 37331870

Neighbor

gene id symbol gene type direction distance location
LOC110525881 LOC106585120 coding downstream 138332 37160379 ~ 37193152 (-)
LOC110525880 casp3 coding downstream 228490 37097779 ~ 37102994 (-)
ncaph LOC106585119 coding downstream 253769 37068792 ~ 37077715 (-)
vamp8 LOC106585118 coding downstream 266454 37050701 ~ 37065030 (-)
vamp5 LOC106585117 coding downstream 284207 37037439 ~ 37047277 (-)
ogfod2 ogfod2 coding upstream 8835 37340705 ~ 37344084 (-)
LOC110525887 LOC106585127 coding upstream 136888 37468758 ~ 37482116 (-)
zmat4a zmat4 coding upstream 296925 37628795 ~ 37778250 (-)
sfrp1a LOC106585130 coding upstream 493184 37825054 ~ 37842809 (-)
loxl2b LOC106585132 coding upstream 584560 37916430 ~ 37996902 (-)
G503114 NA non-coding downstream 64105 37267167 ~ 37267379 (-)
G503113 NA non-coding downstream 67107 37264167 ~ 37264377 (-)
G503112 NA non-coding downstream 68357 37262821 ~ 37263127 (-)
G503110 NA non-coding downstream 70596 37260529 ~ 37260888 (-)
G503108 NA non-coding downstream 76264 37254850 ~ 37255220 (-)
G503178 NA non-coding upstream 29161 37361031 ~ 37362059 (-)
G503195 NA non-coding upstream 55031 37386901 ~ 37387101 (-)
G503239 NA non-coding upstream 102824 37434694 ~ 37538914 (-)
G503311 NA non-coding upstream 210994 37542864 ~ 37543074 (-)
G503316 NA non-coding upstream 216786 37548656 ~ 37548926 (-)
G503064 NA other downstream 90547 37239844 ~ 37240937 (-)
hk2 LOC106585103 other downstream 814216 36507843 ~ 36569143 (-)
G501142 NA other downstream 1563555 35765366 ~ 35767929 (-)
G498960 NA other downstream 3290310 34040359 ~ 34041174 (-)
nsmfb nsmf other upstream 1623000 38926899 ~ 38967540 (-)
G505472 NA other upstream 1874008 39205878 ~ 39206269 (-)
G505493 ptch1 other upstream 1900823 39232693 ~ 39233210 (-)
aopep cssa24h9orf3 other upstream 2089798 39313471 ~ 39434971 (-)
G506641 NA other upstream 2291815 39623685 ~ 39624344 (-)

Expression


Co-expression Network