G504658


Basic Information

Item Value
gene id G504658
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 38680103 ~ 38683577 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU572996
TATGACTAAAGAATAACAGCATCTAACGAACAACGTTTTGCAATGTAACCATAGAGGGTATTTCCTATGACGATACAGTACGTTTGATGTTTTCCCTTAACAGGCAAGGACTCATGCAAAACCTTGCTAAAGCAACAAATTGATCAAGATGAAACGAGCAACAGAGCATTCAACACATTTGGATggacagaagaaaaaaaaggaGTGGTGAGTATTGTCCCCGTAGAAATAGAATACAAGGTTTGCCATTTGGAGTGTACCCATGAATTTACCAGCGAACATGCCAAGGTCTGAGGTTCCTGCAGGCCTGTTCTAGTGATTCTATTTCTAAGGTAATTACCTCAGATCATGTACAGATCAGTATGATCATCAGATGGCACTGCTGAAAGTCTATGGAGGGGGAGAGAACTGAAAACGTTATTAACCACAGCCTTAAGACGATCAAATTAATGTTACAACACAAAGTTACTTTTGCAAGACATACAAAAATAGATACCATATCAATTAGCAATAGTTGGCACATAAATGCAAAGATATGGATGTAATATGCTTCAGCGTAGACTAGTATGAGTATTATTGTATATATTCTAGCAGCATGTATATGTTATAATTAACACAACTGTACATGCTAAATGCAGTCTGCATAATGGGAGATGACAACCATGTCTACTGGCTAGATAAAACAAATAGTATATTATTTATGCATGTACAAACAATACCACAGACAATTTCTCAGACTGATTACTGAAGGCGTGTAAACTGCAATTGAACATGTCTTCACCCTCATAATGTTGAGGAAATCAAGAAAGGTTCCCACTGATATTTATATTCCTGATTTGCCTACATCAATTCAAATGAGCCCAGACATGCTTTTAAACCAactcaacatacagtataatatgTTATCAATAAATAAAATCtctcatatatatatatattctatagatAAACTCCCCTCCGTATTTATATGGACAGTGAAGCAAAAATTTGCAAATGTTGCCCTATACCCCagcattttagaATGTCACTTTTTGGGGGGGTATTTTTTATGCATAtctgttttactgtttagaaatgaaagcactttatgtatttAGTCCCCCTATTAATTCCTAAGTATTTGGACATATCCACatatagtgtattaaagtagtcaataGTTTTtcatttggtcccatattcctagcacgaaATGacgacatcaagcttgtgactctacaatcttgttggatgcatttacaGTTTGTTTTTGTTGCGTTTCAAATGATGTTTTGCCCAATAGGAACTGAatggagactagatacataacgttctttcatttctaaatggtaaaaAAGATAGGGATGAAtataccctcaaataaaaaggtgacattctgtactgtcgtcTCATaggaaacatttgatctcaaatccaaaatgctggcgTATTGGGTGACATTTACAATTTTTTTCTTCAATGTGCAGAAAAATACAGAGGAGAGTATATATAACTATATTTCACTCTCTGCATACATCAATAGCAAAACCTGTAATATAACAGCATTTGCCGATTTGCGTATGTGACGTAAATTAGCAATAGAACACTCATAAGCATATATTATGAACAATTACAAATAAAATGTTGGTCTTTAAAGTAAACCAATACTTAATATTATGTGTATCTTTATTGAAACACCTCATGCACAGAGAGGTTTCAATGTGTCGAGACTGGCTTGAAAACATCCTGGGTTCATTTGCGTTTAGATGTAAAGCCAATTGTTAGTTATCCAAGACTCCCCTATTCAACTGAAGGATCCCAAATAGACCATCTCCCATGTATAATGACATTAATTCATCAGTGTGCAATATTTAGGCCTGTGTGGTGTAGTAAAATCAAAATATTTCACCGGACATATGAACATACCAAAATACACCACAGTAAAAAGGGTTTTTATAAGGATAGAGAAGTGCTCTTTCTCACAAAAATGAAACATTTTTTGGATCCATCAATTTCACAGGAGAGCACGTCAACAGATCAATGGCTCATTGATCAGAATTAACTTATGACGGATGCAGGCACTTCTTATAGTAAGAGCTAGGTCACAGATTTGATCTGGAATCAATGAACAGCTCAAAGCTGTGAAGAAAACACTAATACAAATAAACATTTACCCTTGAATATCATTAGATTTCTAAGACCCTGTTTAGTGATTTGTAAACAATCCGTGATCCCTTCACAATAAAAGTCCTTCCCACGTCAAGCTATTACACCAGGCTGATGACAACTTCTCGGTCGCTGTGATTCAGGTTTAGTGAACTACCCTGTTGCAAACTACAGTGTATCTTCCACAGATCCAACATGCAAACTAATATAGCAACTCAGCTCaaaaagagaaaagaaaatgTGCGCAGACAACATTGATTCAAAATCCAAATACTGCACCTGGAATTCATGGAATTCAAGAAATTGCCACCACTACAAACACAGGACTTGAGATTAGAGGCACACAACGCTTGACACAAATGTCAGATGACTTCAAATTCCTACTCTTAAAATGCACTGCAAAGTATGTGCCAAGCTGACCATTTAAAAAGGTAAGATAATGGGCATCAATTGTAGTTGTTGGAACTCCACGTCTGTCTACGCAAAAGTTGCTCGAAATGAGTGGTTTACCAAATATCTAGCATCAAATGCAGTTACACAAGCGCCTAGCGCTAGCAGAATGACACGACCATTGCTCTGTTTCTGTTTTCATCCTACAAAGCTAAAGTGCCAGAGGTCCATGGTACAAGCGTTAGCAGTAGCATAGTAGTATCAATACAATGACAGCAAACGGCTATCCCACTAACTGAAGGGAAATCTCAAACAACACTTTCTATTTTCAATTTAACAAGAACTACATTGCAAAATGTGATTGTGATATTGGTTGCTTGGTAACAATGGCATCAAGCTAAATGATGGCTAGCACAACACTGTGCTGTGAATGGTGTACTCTTCAACCAGCCAAGAAACCACATACTAACCGAAGATCTCGGacgtgttccaaatggcacAGCAAGGTCCCTGGATGGCATGGCAAACCCCTACAAGTGGATTACATAAGTAACCAAGGGAGAGAGCCTGGGCAGTGGGCACACGTTTTACCTAGAGGCCAGTGAGGTCAACAATAGCCTTGATGAATATAGTATCATCTCGTATGTAGGAGTTTTTGGTGTCCAGTTTGGGAAGAGGGCAGAAGAGTGGGCAGCCGCTGGCGATGTTCATGTCACTGACGGGCCtctggaaggaggaggaggagatgtcgGGACGGAAGGCATCGATGATGTGCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU572996 True 3312 lncRNA 0.38 4 38680103 38683577

Neighbor

gene id symbol gene type direction distance location
rabl6b LOC106585139 coding downstream 15478 38635426 ~ 38664625 (-)
LOC110525905 LOC106585140 coding downstream 53948 38621959 ~ 38626155 (-)
araf LOC106585138 coding downstream 60242 38590907 ~ 38619861 (-)
tbx3b LOC106584937 coding downstream 148891 38526426 ~ 38531212 (-)
tm2d2 NA coding downstream 159263 38498656 ~ 38520840 (-)
nsmfb nsmf coding upstream 243322 38926899 ~ 38967540 (-)
LOC110525916 ccdc183 coding upstream 321634 39005211 ~ 39015501 (-)
pnpla7b LOC106585146 coding upstream 333115 39016692 ~ 39033431 (-)
ercc6l2 ercc6l2 coding upstream 406654 39090231 ~ 39106621 (-)
aopep cssa24h9orf3 coding upstream 629894 39313471 ~ 39434971 (-)
G504590 NA non-coding downstream 71451 38545005 ~ 38608652 (-)
G504603 NA non-coding downstream 97207 38548483 ~ 38582896 (-)
G504615 NA non-coding downstream 106349 38573331 ~ 38573754 (-)
G504971 NA non-coding upstream 86190 38769767 ~ 38770008 (-)
G504974 NA non-coding upstream 90479 38774056 ~ 38774498 (-)
G504975 NA non-coding upstream 91381 38774958 ~ 38775263 (-)
G505019 NA non-coding upstream 171879 38855456 ~ 38857445 (-)
G505050 NA non-coding upstream 216547 38900124 ~ 38900361 (-)
G503159 LOC106580514 other downstream 1343551 37331484 ~ 37336552 (-)
G503064 NA other downstream 1439166 37239844 ~ 37240937 (-)
vamp8 LOC106585118 other downstream 1615114 37050701 ~ 37065030 (-)
hk2 LOC106585103 other downstream 2162835 36507843 ~ 36569143 (-)
G501142 NA other downstream 2912174 35765366 ~ 35767929 (-)
G505472 NA other upstream 522301 39205878 ~ 39206269 (-)
G505493 ptch1 other upstream 549116 39232693 ~ 39233210 (-)
G506641 NA other upstream 940108 39623685 ~ 39624344 (-)

Expression


Co-expression Network