G504886


Basic Information

Item Value
gene id G504886
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39084917 ~ 39086012 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU573240
cccttaacaaaagggggggtcaaaatcaaaagtaacagtcagtatctggtgtggacaccagctgcattaagtactgcagatCCGTGCtcctcgctggccatggcagaacactgacattcctgtcttgcaggaaatcacacacagaacgagcagtatggctggtggcattgtcatgctggagggtcatgtcaggatgaacctgcaggaagggtaccacatgagggaggaggatgtattccctgtaacgcacagcgttgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgacgcaccgccccagaccatgacggacccactacctccaaatcgatcccgctccagagtacaggcctcggtgtaacactcattccttcaacgataaacacgaatccgaccaacACCCCGGGTGAGACAAAacagcgactcgtcagtgaagagcaccttttgccagtcctgtctggtccagtgacggtgggtttgtgcccataggcgacgttgttgccggtgatgtctggtgaggacctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgcggacagtctgagcactgatggttggattgtgtgttcctggtgtaactcggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatgttcggatgtaccgatcctgtgcaggtgtttttacgtggtctgccactgcgaggacgatcagctgtccgtcctgtctccctgtagcgctgtcttaggaatctcacagtacggacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctaagacacattcacacagatgagcagggaccctggtcaTCTTTCTttaggtgtttttcagagtcagtagaaaggcctctttagtggcttaagttttcataactgtgaccttaatttccttccgtctataagctgttagtgtcttaatgatcgttccacagatgcatgttcattaattgtttatggttcattgaacaagcatgtttAAAcaatttacaatgaagatctgtgaagttttttggatttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU573240 True 1096 lncRNA 0.50 1 39084917 39086012

Neighbor

gene id symbol gene type direction distance location
hsd17b3 hsd17b3 coding upstream 16527 39042158 ~ 39068390 (+)
LOC110525918 LOC106585148 coding upstream 49723 39033662 ~ 39035194 (+)
zgc:162952 LOC100195200 coding upstream 192686 38865594 ~ 38892231 (+)
b3galt8 LOC106585144 coding upstream 223920 38858009 ~ 38860997 (+)
LOC110525909 LOC100380751 coding upstream 227470 38746654 ~ 38857447 (+)
ptch1 ptch1 coding downstream 69464 39155476 ~ 39234874 (+)
fancc fancc coding downstream 183903 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding downstream 202577 39288589 ~ 39288662 (+)
LOC110525923 NA coding downstream 316525 39402537 ~ 39405261 (+)
cbwd cbwd1 coding downstream 435711 39521723 ~ 39526646 (+)
G504903 NA non-coding upstream 1821 39082884 ~ 39083096 (+)
G504896 NA non-coding upstream 25292 39059322 ~ 39059625 (+)
G504865 NA non-coding upstream 57443 39026990 ~ 39027474 (+)
G504798 NA non-coding upstream 171301 38913328 ~ 38913616 (+)
G504796 NA non-coding upstream 173460 38911235 ~ 38911457 (+)
G504905 ercc6l2 non-coding downstream 7913 39093925 ~ 39094818 (+)
G505180 NA non-coding downstream 36347 39122359 ~ 39122579 (+)
G505219 NA non-coding downstream 83090 39169102 ~ 39169323 (+)
G505221 NA non-coding downstream 85910 39171922 ~ 39172186 (+)
G505222 NA non-coding downstream 86602 39172614 ~ 39172964 (+)
G499111 NA other upstream 4933180 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5619862 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 5764569 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 5920656 33135282 ~ 33165186 (+)
polk polk other upstream 6156066 32926258 ~ 32936958 (+)
LOC110525927 smim15 other downstream 588000 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 648772 39734703 ~ 39750180 (+)
G505988 NA other downstream 876640 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 1110788 40196800 ~ 40203886 (+)

Expression


Co-expression Network