G505222


Basic Information

Item Value
gene id G505222
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39172614 ~ 39172964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU573628
GTTTAGCTAGCCCATATGCTTAGCTAGACCATGAGCTTAGCTAGCCCACGAGTTTAGCTAGCCCATAAACTTAGCTAGCCCATGAGCTTAGGTGTAACTGGGTATGAGGGAAGACTGAAGGGTGAGGTGAGATGGGACTAGGTTTGAGGGAAGGCTGgtgggtgaggtgaggtggaacTGGGTATGAGGGAAGACTGTGGAGGGTGATGTGAGGTGAAATTGGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU573628 True 224 lncRNA 0.51 2 39172614 39172964

Neighbor

gene id symbol gene type direction distance location
hsd17b3 hsd17b3 coding upstream 104224 39042158 ~ 39068390 (+)
LOC110525918 LOC106585148 coding upstream 137420 39033662 ~ 39035194 (+)
zgc:162952 LOC100195200 coding upstream 280383 38865594 ~ 38892231 (+)
b3galt8 LOC106585144 coding upstream 311617 38858009 ~ 38860997 (+)
LOC110525909 LOC100380751 coding upstream 315167 38746654 ~ 38857447 (+)
fancc fancc coding downstream 96951 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding downstream 115625 39288589 ~ 39288662 (+)
LOC110525923 NA coding downstream 229573 39402537 ~ 39405261 (+)
cbwd cbwd1 coding downstream 348759 39521723 ~ 39526646 (+)
foxd5 LOC106584956 coding downstream 360972 39533936 ~ 39535789 (+)
G505221 NA non-coding upstream 428 39171922 ~ 39172186 (+)
G505219 NA non-coding upstream 3291 39169102 ~ 39169323 (+)
G505180 NA non-coding upstream 50035 39122359 ~ 39122579 (+)
G504905 ercc6l2 non-coding upstream 77796 39093925 ~ 39094818 (+)
G504886 NA non-coding upstream 86602 39084917 ~ 39086012 (+)
G505192 NA non-coding downstream 358 39173322 ~ 39174958 (+)
G505227 NA non-coding downstream 9424 39182388 ~ 39182688 (+)
G505232 NA non-coding downstream 21087 39194051 ~ 39194286 (+)
G505242 NA non-coding downstream 38390 39211354 ~ 39211555 (+)
G505243 NA non-coding downstream 38791 39211755 ~ 39212065 (+)
G499111 NA other upstream 5020877 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5707559 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 5852266 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6008353 33135282 ~ 33165186 (+)
polk polk other upstream 6243763 32926258 ~ 32936958 (+)
LOC110525927 smim15 other downstream 501048 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 561820 39734703 ~ 39750180 (+)
G505988 NA other downstream 789688 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 1023836 40196800 ~ 40203886 (+)

Expression


Co-expression Network