Gene
RNA
| Item | Value |
|---|---|
| gene id | G505458 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 39182981 ~ 39183403 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: protein patched homolog 1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU573875 | True | 423 | lncRNA | 0.53 | 1 | 39182981 | 39183403 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ercc6l2 | ercc6l2 | coding | downstream | 76360 | 39090231 ~ 39106621 (-) |
| pnpla7b | LOC106585146 | coding | downstream | 149550 | 39016692 ~ 39033431 (-) |
| LOC110525916 | ccdc183 | coding | downstream | 167480 | 39005211 ~ 39015501 (-) |
| nsmfb | nsmf | coding | downstream | 215441 | 38926899 ~ 38967540 (-) |
| rabl6b | LOC106585139 | coding | downstream | 518356 | 38635426 ~ 38664625 (-) |
| aopep | cssa24h9orf3 | coding | upstream | 130068 | 39313471 ~ 39434971 (-) |
| dock8 | LOC106585156 | coding | upstream | 257149 | 39440552 ~ 39517123 (-) |
| LOC110525926 | zswim6 | coding | upstream | 435879 | 39619282 ~ 39670076 (-) |
| ndufaf2 | ndufaf2 | coding | upstream | 496091 | 39679494 ~ 39715116 (-) |
| LOC110525929 | LOC106585162 | coding | upstream | 568323 | 39751726 ~ 39778538 (-) |
| G505429 | NA | non-coding | downstream | 42051 | 39140685 ~ 39140930 (-) |
| G505102 | NA | non-coding | downstream | 205617 | 38977033 ~ 38977364 (-) |
| G505070 | NA | non-coding | downstream | 258170 | 38924562 ~ 38924811 (-) |
| G505069 | NA | non-coding | downstream | 258524 | 38924221 ~ 38924457 (-) |
| G505053 | NA | non-coding | downstream | 278119 | 38904661 ~ 38904862 (-) |
| G505459 | NA | non-coding | upstream | 892 | 39184295 ~ 39184678 (-) |
| G505460 | NA | non-coding | upstream | 2591 | 39185994 ~ 39186194 (-) |
| G505462 | NA | non-coding | upstream | 5108 | 39188511 ~ 39188731 (-) |
| G505463 | NA | non-coding | upstream | 7623 | 39191026 ~ 39191441 (-) |
| G505464 | NA | non-coding | upstream | 8085 | 39191488 ~ 39191733 (-) |
| G503159 | LOC106580514 | other | downstream | 1846429 | 37331484 ~ 37336552 (-) |
| G503064 | NA | other | downstream | 1942044 | 37239844 ~ 37240937 (-) |
| vamp8 | LOC106585118 | other | downstream | 2117992 | 37050701 ~ 37065030 (-) |
| hk2 | LOC106585103 | other | downstream | 2665713 | 36507843 ~ 36569143 (-) |
| G505472 | NA | other | upstream | 22475 | 39205878 ~ 39206269 (-) |
| G505493 | ptch1 | other | upstream | 49290 | 39232693 ~ 39233210 (-) |
| G506641 | NA | other | upstream | 440282 | 39623685 ~ 39624344 (-) |
