G505248


Basic Information

Item Value
gene id G505248
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39220186 ~ 39220425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU573657
GGATATATTGGCAGCATTTGTGTTGATATTATACATCAGTATGTTTGGAATGAAGTCAATTTCATCAGCCTGTAAGATTAAAATCCGCTAAAACCGAGCTAAAAGATGGAAAGGTACTCTCCAAACAATCTCTTAATACAGCATGTTCCAATCCGTCCGCTTAAAGAAACTTCACTCCCGTGCACTGTGCGGCTGTAggagtgtggagaggagaggcagcagggcagggaggagtggagg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU573657 True 240 lncRNA 0.45 1 39220186 39220425

Neighbor

gene id symbol gene type direction distance location
hsd17b3 hsd17b3 coding upstream 151796 39042158 ~ 39068390 (+)
LOC110525918 LOC106585148 coding upstream 184992 39033662 ~ 39035194 (+)
zgc:162952 LOC100195200 coding upstream 327955 38865594 ~ 38892231 (+)
b3galt8 LOC106585144 coding upstream 359189 38858009 ~ 38860997 (+)
LOC110525909 LOC100380751 coding upstream 362739 38746654 ~ 38857447 (+)
fancc fancc coding downstream 49490 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding downstream 68164 39288589 ~ 39288662 (+)
LOC110525923 NA coding downstream 182112 39402537 ~ 39405261 (+)
cbwd cbwd1 coding downstream 301298 39521723 ~ 39526646 (+)
foxd5 LOC106584956 coding downstream 313511 39533936 ~ 39535789 (+)
G505243 NA non-coding upstream 8121 39211755 ~ 39212065 (+)
G505242 NA non-coding upstream 8631 39211354 ~ 39211555 (+)
G505232 NA non-coding upstream 25900 39194051 ~ 39194286 (+)
G505227 NA non-coding upstream 37498 39182388 ~ 39182688 (+)
G505192 NA non-coding upstream 45228 39173322 ~ 39174958 (+)
G505249 NA non-coding downstream 36 39220461 ~ 39220998 (+)
G505250 NA non-coding downstream 1588 39222013 ~ 39222368 (+)
G505251 NA non-coding downstream 2314 39222739 ~ 39223107 (+)
G505253 NA non-coding downstream 6452 39226877 ~ 39227171 (+)
G505255 NA non-coding downstream 9346 39229771 ~ 39230035 (+)
G499111 NA other upstream 5068449 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5755131 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 5899838 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6055925 33135282 ~ 33165186 (+)
polk polk other upstream 6291335 32926258 ~ 32936958 (+)
LOC110525927 smim15 other downstream 453587 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 514359 39734703 ~ 39750180 (+)
G505988 NA other downstream 742227 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 976375 40196800 ~ 40203886 (+)

Expression


Co-expression Network