Gene
RNA
| Item | Value |
|---|---|
| gene id | G505493 |
| gene name | ptch1 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 39232693 ~ 39233210 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ptch1 | Predicted to enable hedgehog family protein binding activity; hedgehog receptor activity; and smoothened binding activity. Acts upstream of or within several processes, including cardioblast differentiation; intramembranous ossification; and negative regulation of smoothened signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including cranium; digestive system; epithelium; mesenchyme; and nervous system. Human ortholog(s) of this gene implicated in basal cell carcinoma; holoprosencephaly; holoprosencephaly 7; and nevoid basal cell carcinoma syndrome. Orthologous to human PTCH1 (patched 1). |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU573913 | True | 518 | TUCP | 0.63 | 1 | 39232693 | 39233210 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ercc6l2 | ercc6l2 | coding | downstream | 126072 | 39090231 ~ 39106621 (-) |
| pnpla7b | LOC106585146 | coding | downstream | 199262 | 39016692 ~ 39033431 (-) |
| LOC110525916 | ccdc183 | coding | downstream | 217192 | 39005211 ~ 39015501 (-) |
| nsmfb | nsmf | coding | downstream | 265153 | 38926899 ~ 38967540 (-) |
| rabl6b | LOC106585139 | coding | downstream | 568068 | 38635426 ~ 38664625 (-) |
| aopep | cssa24h9orf3 | coding | upstream | 80261 | 39313471 ~ 39434971 (-) |
| dock8 | LOC106585156 | coding | upstream | 207342 | 39440552 ~ 39517123 (-) |
| LOC110525926 | zswim6 | coding | upstream | 386072 | 39619282 ~ 39670076 (-) |
| ndufaf2 | ndufaf2 | coding | upstream | 446284 | 39679494 ~ 39715116 (-) |
| LOC110525929 | LOC106585162 | coding | upstream | 518516 | 39751726 ~ 39778538 (-) |
| G505492 | ptch1 | non-coding | downstream | 149 | 39232209 ~ 39232544 (-) |
| G505490 | NA | non-coding | downstream | 719 | 39231642 ~ 39231974 (-) |
| G505489 | NA | non-coding | downstream | 2169 | 39230054 ~ 39230524 (-) |
| G505486 | NA | non-coding | downstream | 5460 | 39227003 ~ 39227233 (-) |
| G505485 | NA | non-coding | downstream | 7491 | 39224963 ~ 39225202 (-) |
| G505491 | NA | non-coding | upstream | 210 | 39233420 ~ 39233840 (-) |
| G505551 | NA | non-coding | upstream | 106649 | 39339859 ~ 39362610 (-) |
| G505589 | NA | non-coding | upstream | 162228 | 39395438 ~ 39395819 (-) |
| G505590 | NA | non-coding | upstream | 162782 | 39395992 ~ 39396250 (-) |
| G505472 | NA | other | downstream | 26424 | 39205878 ~ 39206269 (-) |
| G503159 | LOC106580514 | other | downstream | 1896141 | 37331484 ~ 37336552 (-) |
| G503064 | NA | other | downstream | 1991756 | 37239844 ~ 37240937 (-) |
| vamp8 | LOC106585118 | other | downstream | 2167704 | 37050701 ~ 37065030 (-) |
| G506641 | NA | other | upstream | 390475 | 39623685 ~ 39624344 (-) |
| LOC110525932 | LOC106585164 | other | upstream | 604438 | 39826260 ~ 39877951 (-) |
| G506785 | NA | other | upstream | 653812 | 39887022 ~ 39889931 (-) |
