G505316


Basic Information

Item Value
gene id G505316
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39371410 ~ 39371666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU573725
cctcccgccaatgagctgcacttcctaacctcccgccaatgagctgcacttcctaacctcccgccaaatgtatgaccatattagagacacatatttccctcagattacacaaatccacaaagaattcaaaaacaaacccaattttgataaactcccatatctactgggtgaaataccagtgagCCATCACTGCAGCAATATTTgttacctgttgccacaagaaaagagcaaccagtgaagaacaaacaccattgtaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU573725 True 257 lncRNA 0.43 1 39371410 39371666

Neighbor

gene id symbol gene type direction distance location
fancc fancc coding upstream 59312 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding upstream 82748 39288589 ~ 39288662 (+)
ptch1 ptch1 coding upstream 136536 39155476 ~ 39234874 (+)
hsd17b3 hsd17b3 coding upstream 303020 39042158 ~ 39068390 (+)
LOC110525918 LOC106585148 coding upstream 336216 39033662 ~ 39035194 (+)
LOC110525923 NA coding downstream 30871 39402537 ~ 39405261 (+)
cbwd cbwd1 coding downstream 150057 39521723 ~ 39526646 (+)
foxd5 LOC106584956 coding downstream 162270 39533936 ~ 39535789 (+)
pgm5 LOC106585157 coding downstream 164978 39536644 ~ 39583427 (+)
LOC110525927 smim15 coding downstream 302298 39673964 ~ 39680031 (+)
G505314 NA non-coding upstream 761 39370420 ~ 39370649 (+)
G505206 NA non-coding upstream 56330 39313150 ~ 39315080 (+)
G505255 NA non-coding upstream 141375 39229771 ~ 39230035 (+)
G505253 NA non-coding upstream 144239 39226877 ~ 39227171 (+)
G505251 NA non-coding upstream 148303 39222739 ~ 39223107 (+)
G505329 NA non-coding downstream 17095 39388761 ~ 39389035 (+)
G505347 NA non-coding downstream 45200 39416866 ~ 39417144 (+)
G505348 NA non-coding downstream 46424 39418090 ~ 39418322 (+)
G505349 NA non-coding downstream 47596 39419262 ~ 39419488 (+)
G505354 NA non-coding downstream 53133 39424799 ~ 39425157 (+)
G499111 NA other upstream 5219673 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5906355 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 6051062 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6207149 33135282 ~ 33165186 (+)
LOC110525928 LOC106585161 other downstream 363118 39734703 ~ 39750180 (+)
G505988 NA other downstream 590986 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 825134 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 885401 40256994 ~ 40259050 (+)

Expression


Co-expression Network