G505349


Basic Information

Item Value
gene id G505349
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39419262 ~ 39419488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU573761
caaCTCTATGTGTgtagaaaaaaaggcacagcacaccaacatcaaaacctcatcccaactgtaaattatggtggagggagcatcatggtttggagctgctttgctgcctcagggcctggacagcttgctatcatcgaaaGGAAAAaggaattcccaagtttatcaaaacattttgtaggagaatgtaaggctacctgtccgccaattgaagctcaacaaaagttggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU573761 True 227 lncRNA 0.44 1 39419262 39419488

Neighbor

gene id symbol gene type direction distance location
LOC110525923 NA coding upstream 14001 39402537 ~ 39405261 (+)
fancc fancc coding upstream 107164 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding upstream 130600 39288589 ~ 39288662 (+)
ptch1 ptch1 coding upstream 184388 39155476 ~ 39234874 (+)
hsd17b3 hsd17b3 coding upstream 350872 39042158 ~ 39068390 (+)
cbwd cbwd1 coding downstream 102235 39521723 ~ 39526646 (+)
foxd5 LOC106584956 coding downstream 114448 39533936 ~ 39535789 (+)
pgm5 LOC106585157 coding downstream 117156 39536644 ~ 39583427 (+)
LOC110525927 smim15 coding downstream 254476 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 coding downstream 315215 39734703 ~ 39750180 (+)
G505348 NA non-coding upstream 940 39418090 ~ 39418322 (+)
G505347 NA non-coding upstream 2118 39416866 ~ 39417144 (+)
G505329 NA non-coding upstream 30227 39388761 ~ 39389035 (+)
G505316 NA non-coding upstream 47596 39371410 ~ 39371666 (+)
G505314 NA non-coding upstream 48613 39370420 ~ 39370649 (+)
G505354 NA non-coding downstream 5311 39424799 ~ 39425157 (+)
G505356 NA non-coding downstream 7180 39426668 ~ 39426903 (+)
G505359 NA non-coding downstream 10317 39429805 ~ 39430032 (+)
G505363 NA non-coding downstream 13192 39432680 ~ 39432901 (+)
G505333 NA non-coding downstream 16500 39435988 ~ 39531191 (+)
G499111 NA other upstream 5267525 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5954207 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 6098914 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6255001 33135282 ~ 33165186 (+)
G505988 NA other downstream 543164 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 777312 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 837579 40256994 ~ 40259050 (+)

Expression


Co-expression Network