G505354


Basic Information

Item Value
gene id G505354
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39424799 ~ 39425157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU573766
tctgccgaaattgttgccacccctattactagcctgttcaacctctctttcgtgtcgtctgagattcccaaagattggaaagcagctgcggtcatccccctcttcaaagggggggacactcttgacccaaactgctacagacctatatctatcctaccatgcctttctaaggtcttcgaaagccaagtcaacaaacagattaccgaccatttcgaatctcaccataccttctctgctatgcaatctggtttcagagctggtcacgggtgcacctcagccacgctcaaggtcctaaacgatatcttaaccgtcatcgataagaaacattactgtgcagccgtattcattgatctggccaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU573766 True 359 lncRNA 0.48 1 39424799 39425157

Neighbor

gene id symbol gene type direction distance location
LOC110525923 NA coding upstream 19538 39402537 ~ 39405261 (+)
fancc fancc coding upstream 112701 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding upstream 136137 39288589 ~ 39288662 (+)
ptch1 ptch1 coding upstream 189925 39155476 ~ 39234874 (+)
hsd17b3 hsd17b3 coding upstream 356409 39042158 ~ 39068390 (+)
cbwd cbwd1 coding downstream 96566 39521723 ~ 39526646 (+)
foxd5 LOC106584956 coding downstream 108779 39533936 ~ 39535789 (+)
pgm5 LOC106585157 coding downstream 111487 39536644 ~ 39583427 (+)
LOC110525927 smim15 coding downstream 248807 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 coding downstream 309546 39734703 ~ 39750180 (+)
G505349 NA non-coding upstream 5311 39419262 ~ 39419488 (+)
G505348 NA non-coding upstream 6477 39418090 ~ 39418322 (+)
G505347 NA non-coding upstream 7655 39416866 ~ 39417144 (+)
G505329 NA non-coding upstream 35764 39388761 ~ 39389035 (+)
G505316 NA non-coding upstream 53133 39371410 ~ 39371666 (+)
G505356 NA non-coding downstream 1511 39426668 ~ 39426903 (+)
G505359 NA non-coding downstream 4648 39429805 ~ 39430032 (+)
G505363 NA non-coding downstream 7523 39432680 ~ 39432901 (+)
G505333 NA non-coding downstream 10831 39435988 ~ 39531191 (+)
G505377 LOC106605384 non-coding downstream 39611 39464768 ~ 39484669 (+)
G499111 NA other upstream 5273062 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5959744 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 6104451 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6260538 33135282 ~ 33165186 (+)
G505988 NA other downstream 537495 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 771643 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 831910 40256994 ~ 40259050 (+)

Expression


Co-expression Network